Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq696 185 3e-44 seq9 185 3e-44 seq6 102 3e-19 >seq696 Length=154923 Score = 185 bits (204), Expect = 3e-44 Identities = 396/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| | ||| Sbjct 105623 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATG 105682 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||||||| Sbjct 105683 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 105742 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 105743 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 105802 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 105803 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 105857 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 105858 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 105915 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| |||| | |||| | | | | Sbjct 105916 CCTCAAAATAACTGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTC 105975 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 105976 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 106033 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 106034 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 106092 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 106093 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 106151 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 106152 CTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 106193 Score = 185 bits (204), Expect = 3e-44 Identities = 396/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| | ||| Sbjct 133773 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATG 133714 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||||||| Sbjct 133713 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 133654 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 133653 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 133594 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 133593 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 133539 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 133538 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 133481 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| |||| | |||| | | | | Sbjct 133480 CCTCAAAATAACTGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTC 133421 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 133420 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 133363 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 133362 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 133304 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 133303 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 133245 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 133244 CTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 133203 >seq9 Length=1906741 Score = 185 bits (204), Expect = 3e-44 Identities = 396/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| | ||| Sbjct 1654606 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCTATG 1654547 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||||||| Sbjct 1654546 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 1654487 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 1654486 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 1654427 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 1654426 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 1654372 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 1654371 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 1654314 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| |||| | |||| | | | | Sbjct 1654313 CCTCAAAATAACTGGGGTCAAGGTCGGCCAGTGAGACGGTGGGGGATAAGCTTCATCGTC 1654254 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 1654253 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 1654196 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 1654195 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 1654137 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 1654136 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 1654078 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 1654077 CTGCCGAAGCTGTGGGAT-GTCAAAATGCATCGGTAGGGGAGC 1654036 >seq6 Length=25113588 Score = 102 bits (112), Expect = 3e-19 Identities = 160/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || | | ||| | ||||||||||||| ||||||| ||| ||| ||| | Sbjct 21094471 CGAGAGGGAAACAGTATGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGAAA--A 21094528 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| ||||||| | || ||| || | ||||||||| || || |||| Sbjct 21094529 AGGAGGTAGGGGTGCAGAGACAGCCAAGAGGTTTGCCTATAAGCAGCCA-TCCTTGAAAG 21094587 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||| |||||||| ||||| || ||| || || | |||| |||| Sbjct 21094588 AGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGA 21094646 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAG 557 ||| ||||||| |||||| | | ||| ||||||||| ||| Sbjct 21094647 TCTGCCGAAGCTATGGGAT-GTCAAAATGCATCGGTAGGAGAG 21094688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689588240384