Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2 _202016-11-26] 696 sequences; 206,822,858 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5 150 1e-31 seq7 140 3e-28 >seq5 Length=21221946 Score = 150 bits (166), Expect = 1e-31 Identities = 203/281 (72%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || ||||| ||||||||||| | || || || ||| | || | ||| Sbjct 3397785 ATGTACAAAAAAGCCGAAGCATCCTTCTGGACCGCTGAAGAAGTAGATCTATCACAGGAC 3397726 Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | |||||||| | | ||| |||||||| || ||||| |||||||| | Sbjct 3397725 AACCGCGACTGGGAAAACAATCTCAACGA-CGGTGAACGTCACTTCATCAAACATGTCCT 3397667 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| ||||| || ||||| ||||| |||||| | || ||| | Sbjct 3397666 CGCTTTCTTCGCCGCATCTGACGGAATCGTATTAGAGAATCTCGCTTCTCGATTCATGTC 3397607 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| |||||||||||| ||||||||| |||||||| || || || ||| | Sbjct 3397606 CGATGTTCAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAAAATAT 3397547 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||||||||||||||| ||| | || ||||||| || |||| Sbjct 3397546 CCACTCGGAGATGTATAGTCTCCTTCTCGATACTTATATCA 3397506 >seq7 Length=24649197 Score = 140 bits (154), Expect = 3e-28 Identities = 365/553 (66%), Gaps = 8/553 (1%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || |||||| | || ||||| Sbjct 21840896 ATGTACAAGAAAGCCGAAGCGTCCTTCTGGACCGCCGAAGAAGTCGATCTCTCTCAAGAC 21840837 Query 61156 ATGAATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | |||||||| | |||| | || |||| || ||||| ||||| || | Sbjct 21840836 AATCGCGACTGGGAAAACTCACTATCCAACGACGAACGTCACTTCATCAAACACGTCCTC 21840777 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||||||||| || ||||| ||||| |||||| | | | || ||| | Sbjct 21840776 GCCTTCTTTGCCGCATCAGACGGAATCGTTCTGGAGAATCTCTCGACCCGATTCATGTCC 21840717 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 || || || | || || || ||| |||||||| ||||| || || || |||||| | Sbjct 21840716 GATGTTCAGATCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATCGAGAATATT 21840657 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 || || |||||||| ||| | || |||| || ||||||| || || | || Sbjct 21840656 CATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAAGAGAGAGAT 21840597 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 | | || || ||||| || || || |||| | ||||| || ||||| | Sbjct 21840596 CATCTCTTTCGCGCAATCGAAACCATTCCTTGTGTGACGAAAAAAGCAGAATGGGCTATG 21840537 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 || ||||||| | | | | | || | ||| || | | || ||||| || Sbjct 21840536 AAATGGATCAACGG---ATCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTT 21840480 Query 61513 GAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 || ||| |||| ||| ||| | | |||| | || || |||||||||||||| || | Sbjct 21840479 GAAGGTATATTCTTCTCTGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGAGGTTT 21840421 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || || || ||| || || ||||| || | ||||| || | || ||||| Sbjct 21840420 AATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGA 21840361 Query 61632 TTTTGCTGTTTTG 61644 ||| ||| |||| Sbjct 21840360 TTTCGCTTGTTTG 21840348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564627629440