Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20lyrata_20subsp._20lyrata_20[refseq_20GCF_5F000004255.2
_202016-11-26] 696 sequences; 206,822,858 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq5 150 1e-31
seq7 140 3e-28
>seq5
Length=21221946
Score = 150 bits (166), Expect = 1e-31
Identities = 203/281 (72%), Gaps = 5/281 (2%)
Strand=Plus/Minus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
||||||||||| || ||||| ||||||||||| | || || || ||| | || | |||
Sbjct 3397785 ATGTACAAAAAAGCCGAAGCATCCTTCTGGACCGCTGAAGAAGTAGATCTATCACAGGAC 3397726
Query 61156 ATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211
| |||||||| | | ||| |||||||| || ||||| |||||||| |
Sbjct 3397725 AACCGCGACTGGGAAAACAATCTCAACGA-CGGTGAACGTCACTTCATCAAACATGTCCT 3397667
Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271
|| ||||| ||||| || ||||| ||||| |||||| | || ||| |
Sbjct 3397666 CGCTTTCTTCGCCGCATCTGACGGAATCGTATTAGAGAATCTCGCTTCTCGATTCATGTC 3397607
Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331
|| || ||||| |||||||||||| ||||||||| |||||||| || || || ||| |
Sbjct 3397606 CGATGTTCAAGTCTCGGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAAAATAT 3397547
Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372
||||||||||||||| ||| | || ||||||| || ||||
Sbjct 3397546 CCACTCGGAGATGTATAGTCTCCTTCTCGATACTTATATCA 3397506
>seq7
Length=24649197
Score = 140 bits (154), Expect = 3e-28
Identities = 365/553 (66%), Gaps = 8/553 (1%)
Strand=Plus/Minus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
|||||||| || || ||||| ||||||||||| | || || |||||| | || |||||
Sbjct 21840896 ATGTACAAGAAAGCCGAAGCGTCCTTCTGGACCGCCGAAGAAGTCGATCTCTCTCAAGAC 21840837
Query 61156 ATGAATGACTGGGAGCGTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212
| |||||||| | |||| | || |||| || ||||| ||||| || |
Sbjct 21840836 AATCGCGACTGGGAAAACTCACTATCCAACGACGAACGTCACTTCATCAAACACGTCCTC 21840777
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| ||||||||||| || ||||| ||||| |||||| | | | || ||| |
Sbjct 21840776 GCCTTCTTTGCCGCATCAGACGGAATCGTTCTGGAGAATCTCTCGACCCGATTCATGTCC 21840717
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332
|| || || | || || || ||| |||||||| ||||| || || || |||||| |
Sbjct 21840716 GATGTTCAGATCTCAGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATCGAGAATATT 21840657
Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392
|| || |||||||| ||| | || |||| || ||||||| || || | ||
Sbjct 21840656 CATTCTGAGATGTATAGTCTCCTTCTCGACACTTACATCAAAGACAACAAAGAGAGAGAT 21840597
Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452
| | || || ||||| || || || |||| | ||||| || ||||| |
Sbjct 21840596 CATCTCTTTCGCGCAATCGAAACCATTCCTTGTGTGACGAAAAAAGCAGAATGGGCTATG 21840537
Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512
|| ||||||| | | | | | || | ||| || | | || ||||| ||
Sbjct 21840536 AAATGGATCAACGG---ATCTCAAAGCTTCGCTGAGAGAATCGTAGCTTTTGCTTGCGTT 21840480
Query 61513 GAGGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571
|| ||| |||| ||| ||| | | |||| | || || |||||||||||||| || |
Sbjct 21840479 GAAGGTATATTCTTCTCTGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGAGGTTT 21840421
Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631
||||| || || || ||| || || ||||| || | ||||| || | || |||||
Sbjct 21840420 AATGCCTGGACTCACATTCTCTAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGA 21840361
Query 61632 TTTTGCTGTTTTG 61644
||| ||| ||||
Sbjct 21840360 TTTCGCTTGTTTG 21840348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397564627629440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |