Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3 307 2e-81 seq2 302 7e-80 seq5 111 3e-22 >seq3 Length=23459830 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14199171 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 14199112 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 14199111 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 14199052 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 14199051 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 14198992 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 14198991 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 14198932 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 14198931 AAAGAGCTCTCAGTCTGTC 14198913 >seq2 Length=19698289 Score = 302 bits (334), Expect = 7e-80 Identities = 223/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5200 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 5141 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 5140 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 5081 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||| ||| ||||||| Sbjct 5080 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCATTAACGGAATT 5021 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5020 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 4961 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 4960 AAAGAGCTCTCAGTCTGTC 4942 >seq5 Length=26975502 Score = 111 bits (122), Expect = 3e-22 Identities = 95/116 (82%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | ||||||||||||||| | | |||||||| ||||| ||||||||| Sbjct 14253547 ACTCGTTGAATACATTAGTGTAGCGCGCGTGTGACTCAGAACATTTAAGGACATCACAGA 14253606 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC 117 |||||||||||||||||||||| | | || | | ||||||||||| ||||||| Sbjct 14253607 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGTCATAGTCCCTCT-AGAAGCC 14253661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799945967