Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq7 269 6e-70 seq6 161 2e-37 >seq7 Length=154478 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 101408 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 101349 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 101348 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 101289 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 101288 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 101229 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 101228 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 101180 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 101179 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 101122 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 101121 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 101079 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 101078 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 101035 Score = 269 bits (298), Expect = 6e-70 Identities = 303/404 (75%), Gaps = 30/404 (7%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 137241 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 137300 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 137301 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 137360 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 137361 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 137420 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 137421 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCA 137469 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 137470 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 137527 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 137528 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 137570 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || ||||||||||||||| ||||| Sbjct 137571 TCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 137614 >seq6 Length=366924 Score = 161 bits (178), Expect = 2e-37 Identities = 154/193 (80%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTT-CTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | ||||| ||||| |||||| || |||| ||| ||||| ||||| Sbjct 362832 CTTTACAAGCGGCATTGCCTTTCTTCACTCACGCGATATTGCTGGATC-GGCTTTCGCCC 362890 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 362891 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 362950 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 362951 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTAA 363010 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 363011 CCAACTACCTAAT 363023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399914432