Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq3 320 3e-85 seq2 320 3e-85 seq5 230 4e-58 >seq3 Length=23459830 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 14199004 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 14199059 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 14199060 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 14199119 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 14199120 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 14199178 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 14199179 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 14199237 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 14199238 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 14199297 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 14199298 GTCCCTGCCCTTTGTA 14199313 >seq2 Length=19698289 Score = 320 bits (354), Expect = 3e-85 Identities = 263/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 5033 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 5088 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 5089 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 5148 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||||| |||| Sbjct 5149 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTCA-CACC 5207 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 5208 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 5266 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 5267 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 5326 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 5327 GTCCCTGCCCTTTGTA 5342 >seq5 Length=26975502 Score = 230 bits (254), Expect = 4e-58 Identities = 212/262 (81%), Gaps = 6/262 (2%) Strand=Plus/Minus Query 69 CGGCTTCTTAGAGGGACTAT--CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 |||||||| ||||||||||| | | | | ||| | |||||||||||||||||||||||| Sbjct 14253662 CGGCTTCT-AGAGGGACTATGACCGTTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTC 14253605 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 ||||||| ||||| |||||||| | | ||||||||||||||| | | |||||||||| Sbjct 14253604 TGTGATGTCCTTAAATGTTCTGAGTCACACGCGCGCTACACTAATGTATTCAACGAGTTC 14253545 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 | ||| ||||||| || | |||||| ||| | ||| | |||| || ||||||| | Sbjct 14253544 A-CACTTTGGCCGACAGACCCGGGTAA-CTTTTGAAATTTCATCGTAATGAGGATAGATC 14253487 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||| |||| ||| | | ||||||||||| | ||||||||||| ||||||||| || ||| Sbjct 14253486 ATTGTAATTGTTGGTTTCCAACGAGGAATTCTTAGTAAGCGCGAGTCATCAGCTCGTGTT 14253427 Query 307 GATTACGTCCCTGCCCTTTGTA 328 || ||||||| ||||||||||| Sbjct 14253426 GACTACGTCCATGCCCTTTGTA 14253405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947199933696