Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 138 9e-28 seq5 134 1e-26 >seq3 Length=23459830 Score = 138 bits (152), Expect = 9e-28 Identities = 201/281 (72%), Gaps = 5/281 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || ||||| || |||||||| | || || || ||| | || ||||| Sbjct 9980970 ATGTACAAAAAAGCCGAAGCATCATTCTGGACCGCCGAAGAAGTAGATCTATCACAAGAC 9980911 Query 61156 ATGAATGACTGGGAGC---GTTT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTT 61211 | |||||||| || | | ||| |||||||| || ||||| ||||| || | Sbjct 9980910 AACCGCGACTGGGAAAACAGTCTCAACGA-CGGTGAACGTCACTTCATCAAACACGTCCT 9980852 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 || ||||| || || || ||||| ||||| |||||| | || ||| | Sbjct 9980851 CGCTTTCTTCGCTGCATCTGACGGAATCGTACTAGAGAATCTCGCTTCTCGCTTCATGTC 9980792 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGT 61331 || || ||||| || ||||||||| ||||||||| |||||||| || || || || | Sbjct 9980791 CGATGTTCAAGTCTCTGAGGCGCGTGCTTTCTACGGTTTCCAGATCGCGATTGAAAACAT 9980732 Query 61332 CCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 ||||||||||||||| ||| | || ||||||| || |||| Sbjct 9980731 CCACTCGGAGATGTATAGTCTCCTTCTCGATACTTATATCA 9980691 >seq5 Length=26975502 Score = 134 bits (148), Expect = 1e-26 Identities = 575/889 (65%), Gaps = 25/889 (3%) Strand=Plus/Plus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||| ||| |||| |||||| ||| | || | |||||| |||||||| || || | Sbjct 16408210 TCGATTCTGTAT-GTTCCCAATCCAATACCCACAGATTTGGGAGATGTACAAGAAAGCCG 16408268 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 |||| ||||||||||| | || || |||||| | || |||||| |||||||| Sbjct 16408269 AAGCATCCTTCTGGACAGCCGAAGAAGTCGATCTCTCTCAAGACAATCGCGACTGGGAAA 16408328 Query 61172 GTT---TATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228 | || | | || |||| || ||||||||||| || | || ||||| ||||| | Sbjct 16408329 ACTCACTAACCAACGACGAACGTCACTTCATTAAACACGTCCTCGCCTTCTTCGCCGCAT 16408388 Query 61229 CGGACGGTATCGTCAATGAGAATTTATTGGAAC--GTTTCGCGCAGGAGGTGCAAGTGTC 61286 | ||||| ||||| |||||| | | ||| | ||| | || || || | || Sbjct 16408389 CAGACGGAATCGTTCTCGAGAATCTCT--CAACTAGATTCATGTCCGATGTTCAGATCTC 16408446 Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 || || ||| |||||||| ||||| || || || |||||| | ||||| |||||||| Sbjct 16408447 AGAAGCTCGTGCCTTCTACGGATTCCAAATCGCGATTGAGAATATTCACTCCGAGATGTA 16408506 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGC 61406 ||| | || |||| ||||| |||| || || | || | | || ||| Sbjct 16408507 TAGTCTCCTTCTCGACACGTATATCAAAGACAACAAAGAGAGAGATCATCTTTTTCGTGC 16408566 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAG 61466 ||||| || || || |||| | ||||| || ||||| | || ||||||| | | Sbjct 16408567 AATCGAAACCATTCC--TTGTGACGAAAAAAGCAGAATGGGCTATGAAATGGATCAACGG 16408624 Query 61467 TACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTT 61526 | | | || | ||| || | | || ||||| || || ||| |||| || Sbjct 16408625 ---ATCTCAAAGCTTCGCTGAGAGAATCGTAGCGTTTGCTTGCGTTGAAGGTATATTCTT 16408681 Query 61527 CAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 | || | | |||| | || || |||||||||||||| || | ||||| || || | Sbjct 16408682 CTCCGGTAGCTTTTG-TTCGATATTCTGGTTGAAGAAACGAGGTTTAATGCCTGGACTCA 16408740 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGC 61645 | || || || ||||| || | ||||| || | || |||||||| ||| |||| Sbjct 16408741 CTTTTTCAAACGAATTGATTTCGAGAGACGAAGGTCTTCACTGTGATTTCGCTTGTTTGA 16408800 Query 61646 TATTCAAACGCTATCTGGTGAAT-CGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 ||| | | || ||| | | || | || || ||| || | ||||||| || Sbjct 16408801 TAT--ATAGTCT-TCTTAGAACTAAGTTTG-ATGAAGATCGTTTGAAAGCGATTGTTTGT 16408856 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGC-TTTGCCCGTCTCACTCATCGG 61763 || || || || || || ||| | |||||| || | || | | | || Sbjct 16408857 GATGCTGTTGAGATTGAGAGAGAGTTTGTTTGTGACGCGCTTTCTTGT-GCCTTGGTTGG 16408915 Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG-TCG 61822 |||||| ||| | ||| ||||| ||||| || ||||| || | |||||| | Sbjct 16408916 GATGAATCGTGAGTTGATGAGTCAGTACATTGAGTTCGTTGCTGATAGGTTGTTGGCTGC 16408975 Query 61823 ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 |||||| || || | ||| | || || || ||||||| ||||| |||||| Sbjct 16408976 GCTTGGGTGTGGTAAGG-TGTATGGTGTGACTAATCCTTTTGATTGGATGGAATTGATTT 16409034 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 |||| | || ||||| || ||||| ||||| | || || || ||||| Sbjct 16409035 CGCTTCAGGGTAAGACCAACTTTTTTGAGAAGAGAGTTGGTGAGTATCA 16409083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567966082480