Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq7 576 2e-159 seq2 289 4e-73 seq6 280 2e-70 >seq7 Length=154478 Score = 576 bits (638), Expect = 2e-159 Identities = 717/971 (74%), Gaps = 12/971 (1%) Strand=Plus/Minus Query 188872 ACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-C 188930 ||| | |||||||| || | || ||||| ||||| ||||||||||||| ||| | | | Sbjct 1375 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGAC 1317 Query 188931 TGCAACCATCTGCTTC-ATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCA 188989 ||||| |||| || || |||| || | ||||| || || ||||| |||||||| | Sbjct 1316 CGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTA 1258 Query 188990 TCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTG 189049 | || ||||| || |||| || || | || |||||||| || || || ||||| || Sbjct 1257 TTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTA 1198 Query 189050 TCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGCCGCCTCACTCG 189109 | ||| | || || ||||| | || || ||||| ||||||||||| || || | | Sbjct 1197 TTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTG 1138 Query 189110 ATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTCATCGGCA 189169 |||| ||||| |||||||| ||||||| |||| | || | ||||| | | || Sbjct 1137 ATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG-- 1080 Query 189170 TCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTCCTT 189226 | || || | | |||||||||||||||||||| || |||||| ||||||||||||| Sbjct 1079 TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTT 1021 Query 189227 GGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTAT 189285 |||| ||| |||| || || || ||||||||||| || | || || || || ||||| Sbjct 1020 GGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTAT 962 Query 189286 CCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGAACCTTCAAC 189345 || ||||||| || ||| ||||| | ||||| | || ||| ||| || |||||| Sbjct 961 CCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAAC 902 Query 189346 TACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGA 189405 | ||| |||| ||||| || ||||||||||| || |||||||| || |||||| | || Sbjct 901 TTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGT 842 Query 189406 GTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCT 189465 || || ||||| ||||| || || || || || ||||||||||| | || || ||| Sbjct 841 GTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCT 782 Query 189466 TCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAA 189525 || | | |||||||| |||| || || || | ||||||| || || ||| Sbjct 781 AGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAA 722 Query 189526 GAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAA 189585 ||||||||||| |||||||| || |||||||| || ||||| || || | || |||||| Sbjct 721 GAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAA 662 Query 189586 TATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTG 189645 ||||| |||||||| || ||||| | || |||||| | || || ||||| || || Sbjct 661 TATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTA 602 Query 189646 GGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAAC 189705 ||||| |||||||| || | || | || || ||||| |||||||| ||||| ||||| Sbjct 601 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAAT 542 Query 189706 TTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTC 189765 ||||| ||||| | ||||| ||||||| |||||| | || || ||||| || || | Sbjct 541 TTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATT 482 Query 189766 AACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTT 189825 ||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 481 AACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 422 Query 189826 GATCTGGCAGC 189836 || || || || Sbjct 421 GACCTAGCTGC 411 Score = 551 bits (610), Expect = 7e-152 Identities = 732/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Plus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 190046 ||||| || | ||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 32756 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 32815 Query 190047 TTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 190106 || | || ||||| ||| ||| |||| | || || ||| | || || || || ||| Sbjct 32816 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 32875 Query 190107 GCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTCTT 190166 | || ||||| || || ||| | || ||| || | || ||| |||||| | Sbjct 32876 GTAACTTCATGGTATACTCATGGATTGGCCAGTTCCTATTTAGAAGGTTGCAATTTTTTA 32935 Query 190167 ACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 190226 || || || || || || |||||| || | | | |||||| | | |||| |||||| Sbjct 32936 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 32995 Query 190227 CCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTG 190286 |||||| | ||||| ||||| | ||| ||| | || || || ||||||||||| Sbjct 32996 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTT 33055 Query 190287 GCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG- 190345 || |||||||| |||||||| |||| || || ||| | ||||| |||||||| || || Sbjct 33056 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 33115 Query 190346 TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 190405 ||| || | | || ||||| ||||| || || ||||||||||| || ||||||||||| Sbjct 33116 TCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGT 33174 Query 190406 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGG 190465 | ||||| || || || || || |||||||| |||||||||| ||||| || || Sbjct 33175 TTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 33234 Query 190466 TGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAA 190525 ||| || || || || || ||| ||||||| || || || || ||||| ||||| |||| Sbjct 33235 TGTAGCGGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAA 33294 Query 190526 CCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCA 190585 ||| || || |||||||| || || ||| | ||||| | || || || | || || || Sbjct 33295 CCCATTTCATATGATGGGAGTCGCCGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCA 33354 Query 190586 TGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGC 190645 ||||| |||||||| |||||||| | |||||||||||| ||||| || || || Sbjct 33355 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 33414 Query 190646 ATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTC 190705 || || | || |||| ||||| || ||||| |||||||| || ||||| || ||||| Sbjct 33415 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 33474 Query 190706 TCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 190765 ||||||||||| ||||| || ||||| | ||||| |||||||||||| | ||||| Sbjct 33475 ACAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 33534 Query 190766 TCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 190825 || || | ||| | |||| | | | || | | ||| | ||| | ||||| || Sbjct 33535 ACCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTTTAGCTTTGAACCTACG 33594 Query 190826 TGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTT 190885 ||| |||||||| || ||||| || ||| | ||||| ||||||||||| || |||||||| Sbjct 33595 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCAGAATTTGAGACTTT 33654 Query 190886 TTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCA 190945 || || |||||||| ||||| || |||||| ||||| | ||| |||| || ||||| Sbjct 33655 CTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 33714 Query 190946 ACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || ||||| || || |||| || || || || | ||| | || |||||||| Sbjct 33715 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 33768 >seq2 Length=19698289 Score = 289 bits (320), Expect = 4e-73 Identities = 352/480 (73%), Gaps = 10/480 (2%) Strand=Plus/Minus Query 189358 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTC 189417 ||||| || ||||||||||| || |||||||| || |||||| | || || || ||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 189418 TTCGGTGGTTCACTGTTCTCCGCAATGCATGG-TTCACTCGTTACCTCTTCACTGGTTCG 189476 ||||| || || || || || || ||||| ||| | || || ||| || | | Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946 Query 189477 TGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAAC 189536 ||||||| |||| || || || | ||||||| || || ||||||||| |||| Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886 Query 189537 GTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTT 189596 |||||||| || ||||||||||| ||||| || || | ||||||| | | Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835 Query 189597 CAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTT 189656 |||||| || ||||| | || |||||| | || || ||||| || || ||||| ||||| Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775 Query 189657 TACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATC 189716 ||| || | || | ||||| ||||| |||||||| ||||| || || ||||| ||||| Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715 Query 189717 CATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGG 189776 | ||||| ||||||| |||||| | || || ||||| || || | ||||||||| Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655 Query 189777 TCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 ||||||| ||||| |||||||| ||||| ||||||||||||||||| || || || || Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595 >seq6 Length=366924 Score = 280 bits (310), Expect = 2e-70 Identities = 350/480 (73%), Gaps = 10/480 (2%) Strand=Plus/Plus Query 189358 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTC 189417 ||||| || |||||| ||| || |||||||| || |||||| | || || || ||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 189418 TTCGGTGGTTCACTGTTCTCCGCAATGCATGG-TTCACTCGTTACCTCTTCACTGGTTCG 189476 ||||| || || || || || || ||||| ||| | || || ||| || | | Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464 Query 189477 TGAAACCACTGAAACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAAC 189536 ||||||| |||| || || || | ||||||| || || ||||||||| |||| Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524 Query 189537 GTACAACATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTT 189596 |||||||| || ||||||||||| ||||| || || | ||||||| | | Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575 Query 189597 CAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTT 189656 |||||| || ||||| | || |||||| | || || ||||| || || ||||| ||||| Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635 Query 189657 TACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATC 189716 ||| || | || | ||||| ||||| |||||||| ||||| || || ||||| ||||| Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695 Query 189717 CATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGG 189776 | ||||| ||||||| |||||| | || || ||||| || || | ||||||||| Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755 Query 189777 TCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 ||||||| ||||| |||||||| ||||| ||||||||||||||||| || || || || Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079944518000