Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq7 681 0.0 seq2 311 1e-79 seq6 302 5e-77 >seq7 Length=154478 Score = 681 bits (754), Expect = 0.0 Identities = 751/995 (75%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 ||||| | ||| ||||| || | || ||||||||| | || ||||| ||||| || Sbjct 1396 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1337 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCGTTGCTGCTCC 160690 |||||||| || | ||| | ||||| |||| ||| |||| || ||| |||||||||| Sbjct 1336 ATGATCCCTACCTTATTGACCGCAACT-TCTGTTTTTATTATCGCATTCATTGCTGCTCC 1278 Query 160691 CCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAA 160750 || || || || || ||||| |||||||| ||| |||| || || | || |||||||| Sbjct 1277 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 1218 Query 160751 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCAT 160810 || || || ||||| || ||||| |||| || ||||| | || || ||||| || Sbjct 1217 TATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAAT 1158 Query 160811 TTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGT 160870 |||||||||||||| ||||||||||||| ||||| || |||||||| |||| | || Sbjct 1157 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 1098 Query 160871 ATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACCG 160930 | ||||| | | || | || || |||||||| |||||||||||| | ||| Sbjct 1097 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 1038 Query 160931 CCTCGGCATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 || || ||||| || ||||| ||| ||||||||||| || |||||||| ||||||| || Sbjct 1037 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 979 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | || ||| | ||||||| | ||||| || ||| |||||||||||||| || || | Sbjct 978 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 919 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 |||||||||| |||||||| ||| |||| |||||||| || |||||||| || ||||||| Sbjct 918 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 859 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | || |||||||| ||||| |||||||| ||||| || || || || || ||||||| Sbjct 858 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 799 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATG 161229 |||| |||| |||||| || | | |||||||| || || || || || | | Sbjct 798 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 739 Query 161230 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCG 161289 |||||| || || ||||||||||| || |||||||| || |||||||| ||||| || | Sbjct 738 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 679 Query 161290 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCG 161349 | || |||| |||||||| ||| |||||||| || ||||| || || |||||| | | Sbjct 678 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 619 Query 161350 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCA 161409 | || ||||| || || ||||| ||||| ||||| | ||| | || ||||| |||| Sbjct 618 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 559 Query 161410 ACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 161469 |||| || || ||||| |||||||| || | | ||| |||| || || | || | Sbjct 558 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATA 499 Query 161470 CCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATG 161529 | |||||||| || | || ||||||||||||||||||||||| ||||| || ||||||| Sbjct 498 CTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 439 Query 161530 CTCACAACTTCCCTCTGGATCTCGCTGCTGCTGAG 161564 |||||||||||||||| || || ||||||| |||| Sbjct 438 CTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 404 Score = 536 bits (594), Expect = 1e-147 Identities = 716/991 (72%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 163917 GATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCA 163976 || ||||| || ||||| ||||||||||| || | || ||||| ||| ||| | || Sbjct 32786 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCT 32845 Query 163977 ATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGC- 164035 | || || ||| | || |||||||| ||||| || ||||| || || || | || Sbjct 32846 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCC 32905 Query 164036 -GT--CTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGA 164092 || ||| ||| ||| ||| ||||| | || || || || || || |||||| | Sbjct 32906 AGTTCCTATTTAGA---AGGTTGC-AATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAA 32961 Query 164093 TGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAG 164152 | | | | |||||| | | |||| ||||||||||| | || || || || | | | Sbjct 32962 TAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCG 33021 Query 164153 GTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGAT 164212 ||||| ||| | || || || ||||||||||| || ||||||| ||||||| | || Sbjct 33022 TTGGTGTCAATTAGGTGGTCTATGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAAT 33081 Query 164213 CGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGC 164272 ||||| ||| | || || |||||| |||| || ||| | || || || ||||| Sbjct 33082 AGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGC 33141 Query 164273 TATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGG 164332 || || ||||||||||| |||||||| ||||| || ||||| || || || || || Sbjct 33142 AATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGG 33201 Query 164333 GCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTT 164392 |||||| ||||||||||||| || ||||| || ||||| || || ||||| || | Sbjct 33202 TCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCT 33261 Query 164393 GTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGG 164452 || ||||||| || ||||| |||||| | ||||| || ||||||||||| || || || Sbjct 33262 CTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGG 33321 Query 164453 CATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTT 164512 | || || | ||||| || || ||||||||||||||||| ||||| |||||||| || Sbjct 33322 TGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATT 33381 Query 164513 TGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGAC 164572 |||||||||||| ||||||| ||| || || | || ||||||| ||||| || Sbjct 33382 TGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAAC 33441 Query 164573 TTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAA 164632 ||| || |||||||| || |||||||| ||||| || || ||||| ||||||| ||| Sbjct 33442 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAA 33501 Query 164633 TAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTC 164692 ||| |||||||| || ||||||||| | ||||| || || | || | |||| ||| | Sbjct 33502 TAAACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGC 33561 Query 164693 TATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGAT 164752 | |||| | ||||| | || | || || ||||| ||||| || || || ||||| || Sbjct 33562 TCTTGGAGTAGTCGGTTTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 33621 Query 164753 TAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGA 164812 | ||||| || ||||| ||||||||||| |||||||| || || || || | || || Sbjct 33622 CCGTGCAGCGGAAGATCCAGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGA 33681 Query 164813 AGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGA 164872 ||| | ||||| |||||||| | ||| ||||| || ||| || |||| || || Sbjct 33682 AGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGA 33741 Query 164873 GGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 ||| ||||| || | || ||||| || ||| Sbjct 33742 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 33772 >seq2 Length=19698289 Score = 311 bits (344), Expect = 1e-79 Identities = 361/487 (74%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 161079 TTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTC 161138 |||||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| Sbjct 3332065 TTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 3332006 Query 161139 TTCGGTGGTTCTCTGTTCTCCGCAATGCATGG-TTCACTGGTTACTTCTTCCCTGGTTCG 161197 ||||| || || || || || || ||||| ||| |||| |||||| || | | Sbjct 3332005 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 3331946 Query 161198 TGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 161257 ||||||| || || || || || | ||||||| || |||||||||||| | || Sbjct 3331945 GGAAACCATAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAAGAATAAAC 3331886 Query 161258 CTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 161317 |||||||| || |||||||||||||| || || || ||||||||| | | Sbjct 3331885 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 3331835 Query 161318 CAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 161377 |||||| || ||||| || || |||||| | || || ||||| || || ||||| ||||| Sbjct 3331834 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 3331775 Query 161378 CACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTC 161437 ||||| | ||| | ||| ||||| |||||||| || || || || |||||||| || Sbjct 3331774 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 3331715 Query 161438 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAA 161497 | | ||| |||| || || | || || |||||||| || | || |||||||| Sbjct 3331714 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 3331655 Query 161498 CCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGC 161557 | ||||||| ||||| ||||| || ||||||||||||||||||||||| || || ||||| Sbjct 3331654 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 3331595 Query 161558 TGCTGAG 161564 || |||| Sbjct 3331594 TGTTGAG 3331588 >seq6 Length=366924 Score = 302 bits (334), Expect = 5e-77 Identities = 359/487 (74%), Gaps = 10/487 (2%) Strand=Plus/Plus Query 161079 TTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTC 161138 |||||||| || ||| ||| || |||||||| || |||||||| ||||| |||||||| Sbjct 334345 TTCCAGGCTGAGCACTTCATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 334404 Query 161139 TTCGGTGGTTCTCTGTTCTCCGCAATGCATGG-TTCACTGGTTACTTCTTCCCTGGTTCG 161197 ||||| || || || || || || ||||| ||| |||| |||||| || | | Sbjct 334405 TTCGGCGGCTCCCTATTTAGTGCTATACATGGGTTCCTTGGTAACTTCTAGTTTGATCAG 334464 Query 161198 TGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 161257 ||||||| || || || || || | ||||||| || |||||||||||| | || Sbjct 334465 GGAAACCATAGAAAATGAATCTGCTAATCAAGGTTACAGATTCGGTCAAGAAGAATAAAC 334524 Query 161258 CTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 161317 |||||||| || |||||||||||||| || || || ||||||||| | | Sbjct 334525 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCGTT---------T 334575 Query 161318 CAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 161377 |||||| || ||||| || || |||||| | || || ||||| || || ||||| ||||| Sbjct 334576 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTT 334635 Query 161378 CACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTC 161437 ||||| | ||| | ||| ||||| |||||||| || || || || |||||||| || Sbjct 334636 TACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTAAATTTCAACCAATC 334695 Query 161438 CATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAA 161497 | | ||| |||| || || | || || |||||||| || | || |||||||| Sbjct 334696 AGTAGTTGATAGTCAAGGGCGTGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAA 334755 Query 161498 CCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGC 161557 | ||||||| ||||| ||||| || ||||||||||||||||||||||| || || ||||| Sbjct 334756 CTTTGGTATAGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 334815 Query 161558 TGCTGAG 161564 || |||| Sbjct 334816 TGTTGAG 334822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559327951058800