Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11]
7 sequences; 119,667,750 total letters
Query= NC_031927.1
Length=216121
Score E
Sequences producing significant alignments: (Bits) Value
seq1 95.1 2e-14
>seq1
Length=30427671
Score = 95.1 bits (104), Expect = 2e-14
Identities = 419/653 (64%), Gaps = 38/653 (6%)
Strand=Plus/Minus
Query 163258 TTATGTAATCCTAGCTGCTGCCCTAGTCGGCGGCATTATGGCTAACAAGACTCGCAAAGC 163317
|||||| |||||||||||||| |||||| || ||| |||||||| || | |||
Sbjct 6155246 TTATGTCATCCTAGCTGCTGCTAAAGTCGGTGGGATTCATGCTAACAACACATACCCAGC 6155187
Query 163318 GGAGTTCTTACACGACAATCTAATGATGCAGTGTAATGTAATTGACTCTGCTTACTATTC 163377
|| ||| | | |||||| || ||| ||||| || |||||||||| || |
Sbjct 6155186 TGATTTCATTGGGGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGCTTA-TACAC 6155128
Query 163378 A-GGTGTTAAGAAGCTCCTATTCCTAGGAACATCTTGCATCTATCC------TGCTGGAC 163430
| ||||| ||||| ||||| ||||| || |||||||||| || || |||| |
Sbjct 6155127 ACGGTGTGAAGAAACTCCTCTTCCTTGGTTCATCTTGCATTTACCCCAAATTTGCTCCTC 6155068
Query 163431 -GCCAACACCCACTAAAAGAAAATGAACTCCTTACGGGGGCTCTTGAGCCTACTAACGAC 163489
||| | ||| ||| || || ||||| || | || || || || |||||
Sbjct 6155067 AGCCGATTCCC-------GAATCTGCGCTTCTTACCGGTCCGCTCGAACCGACAAACGAA 6155015
Query 163490 GCTTACGCCATCGCAAAGATCGCAGGAATCAAACAATGTGACTTCTACAGGGAGCAATAT 163549
|| || ||||| |||||||| || || || ||| | ||| || || ||
Sbjct 6155014 TGGTATGCGATCGCCAAGATCGCGGGTATTAAGATGTGTCAAGCTTACCGGCTTCAGCAT 6154955
Query 163550 GGATTTGATGCTATCTCTATTATGCCTCCTAATCTATATGGTCCTGGAGACAATTTCCAC 163609
| ||||||||||| |||||| | ||||| ||||||| || |||||||||
Sbjct 6154954 CAGTGGGATGCTATCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGATAATTTCCAC 6154895
Query 163610 ---GAGGGATCAGGTCACGTCCTCGCATCGTTGATGAACCGCTTCCA------CAACGCC 163660
||| || || || || | | | |||| | || || ||| |||
Sbjct 6154894 CCGGAGAATTC---CCATGTGCTGCCTGCTCTCATGAGGAGGTTTCATGAAGCCAAAGCC 6154838
Query 163661 AAGGTGGCTGGTGAAGCCACTGTAGCTTGCTGGGGTGACGGAACACCTATGAGAGAGTTT 163720
|| |||| |||| ||| | | ||||| |||| || |||| ||||||
Sbjct 6154837 AATAATGCTGACGAAG---TTGTGGTT---TGGGGAAGTGGAAGCCCGTTGAGGGAGTTT 6154784
Query 163721 CT-CTTCTCTGAAGACCTAGCAGAAGCCTGTGCGTTCTTTATGGATAACTACAGTGACTA 163779
| | | || || || | || || || |||| ||||| |||||| | ||||| | |
Sbjct 6154783 TTACATGTC-GATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATCAGTACAGCGGATT 6154725
Query 163780 CGGTCACGTCAATGTTGGAACTGGTGAAGACATCACCATCAAACACCTAGCAGAGAGTAT 163839
| || || ||||| |||| ||||| || | || |||||| | | || ||| |
Sbjct 6154724 TGAGCATGTGAATGTAGGAAGTGGTGTTGAAGTGACGATCAAAGAATTGGCTGAG-TTGG 6154666
Query 163840 TGCAA-AGGTTATTGGTTTTGAAGGAGAGATCCTATGGGACACTTCAAAACCA 163891
|| || | ||| |||| ||| ||||| || | | ||||| || ||||||||
Sbjct 6154665 TGAAAGAAGTTGTTGGGTTTAAAGGAAAGCTTGTTTGGGATACCACAAAACCA 6154613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 691459139497320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |