Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabidopsis_20thaliana_20[refseq_20GCF_5F000001735.3_202011-05-11] 7 sequences; 119,667,750 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 2e-14 >seq1 Length=30427671 Score = 95.1 bits (104), Expect = 2e-14 Identities = 419/653 (64%), Gaps = 38/653 (6%) Strand=Plus/Minus Query 163258 TTATGTAATCCTAGCTGCTGCCCTAGTCGGCGGCATTATGGCTAACAAGACTCGCAAAGC 163317 |||||| |||||||||||||| |||||| || ||| |||||||| || | ||| Sbjct 6155246 TTATGTCATCCTAGCTGCTGCTAAAGTCGGTGGGATTCATGCTAACAACACATACCCAGC 6155187 Query 163318 GGAGTTCTTACACGACAATCTAATGATGCAGTGTAATGTAATTGACTCTGCTTACTATTC 163377 || ||| | | |||||| || ||| ||||| || |||||||||| || | Sbjct 6155186 TGATTTCATTGGGGTCAATCTCCAAATCCAGACCAATGTGATCCACTCTGCTTA-TACAC 6155128 Query 163378 A-GGTGTTAAGAAGCTCCTATTCCTAGGAACATCTTGCATCTATCC------TGCTGGAC 163430 | ||||| ||||| ||||| ||||| || |||||||||| || || |||| | Sbjct 6155127 ACGGTGTGAAGAAACTCCTCTTCCTTGGTTCATCTTGCATTTACCCCAAATTTGCTCCTC 6155068 Query 163431 -GCCAACACCCACTAAAAGAAAATGAACTCCTTACGGGGGCTCTTGAGCCTACTAACGAC 163489 ||| | ||| ||| || || ||||| || | || || || || ||||| Sbjct 6155067 AGCCGATTCCC-------GAATCTGCGCTTCTTACCGGTCCGCTCGAACCGACAAACGAA 6155015 Query 163490 GCTTACGCCATCGCAAAGATCGCAGGAATCAAACAATGTGACTTCTACAGGGAGCAATAT 163549 || || ||||| |||||||| || || || ||| | ||| || || || Sbjct 6155014 TGGTATGCGATCGCCAAGATCGCGGGTATTAAGATGTGTCAAGCTTACCGGCTTCAGCAT 6154955 Query 163550 GGATTTGATGCTATCTCTATTATGCCTCCTAATCTATATGGTCCTGGAGACAATTTCCAC 163609 | ||||||||||| |||||| | ||||| ||||||| || ||||||||| Sbjct 6154954 CAGTGGGATGCTATCTCCGGTATGCCCACGAATCTGTATGGTCAGAATGATAATTTCCAC 6154895 Query 163610 ---GAGGGATCAGGTCACGTCCTCGCATCGTTGATGAACCGCTTCCA------CAACGCC 163660 ||| || || || || | | | |||| | || || ||| ||| Sbjct 6154894 CCGGAGAATTC---CCATGTGCTGCCTGCTCTCATGAGGAGGTTTCATGAAGCCAAAGCC 6154838 Query 163661 AAGGTGGCTGGTGAAGCCACTGTAGCTTGCTGGGGTGACGGAACACCTATGAGAGAGTTT 163720 || |||| |||| ||| | | ||||| |||| || |||| |||||| Sbjct 6154837 AATAATGCTGACGAAG---TTGTGGTT---TGGGGAAGTGGAAGCCCGTTGAGGGAGTTT 6154784 Query 163721 CT-CTTCTCTGAAGACCTAGCAGAAGCCTGTGCGTTCTTTATGGATAACTACAGTGACTA 163779 | | | || || || | || || || |||| ||||| |||||| | ||||| | | Sbjct 6154783 TTACATGTC-GATGATTTGGCTGATGCTTGTGTTTTCTTGATGGATCAGTACAGCGGATT 6154725 Query 163780 CGGTCACGTCAATGTTGGAACTGGTGAAGACATCACCATCAAACACCTAGCAGAGAGTAT 163839 | || || ||||| |||| ||||| || | || |||||| | | || ||| | Sbjct 6154724 TGAGCATGTGAATGTAGGAAGTGGTGTTGAAGTGACGATCAAAGAATTGGCTGAG-TTGG 6154666 Query 163840 TGCAA-AGGTTATTGGTTTTGAAGGAGAGATCCTATGGGACACTTCAAAACCA 163891 || || | ||| |||| ||| ||||| || | | ||||| || |||||||| Sbjct 6154665 TGAAAGAAGTTGTTGGGTTTAAAGGAAAGCTTGTTTGGGATACCACAAAACCA 6154613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691459139497320