Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2 403 3e-110 seq10998 376 4e-102 seq20771 336 3e-90 seq18993 141 1e-31 seq27070 123 4e-26 seq26815 96.9 5e-18 seq3 89.7 8e-16 >seq2 Length=28351830 Score = 403 bits (446), Expect = 3e-110 Identities = 246/256 (96%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 2343186 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2343243 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2343244 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 2343303 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 2343304 CCCGGGCCTGTCGGCCAAGGT-ATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 2343362 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 2343363 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACG 2343422 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 2343423 GCCATAGTCCCTCTAA 2343438 Score = 224 bits (248), Expect = 1e-56 Identities = 133/136 (98%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 2343011 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 2343068 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2343069 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 2343128 Query 121 CCCGGACCTGTCGGCC 136 ||||| |||||||||| Sbjct 2343129 CCCGGGCCTGTCGGCC 2343144 Score = 176 bits (194), Expect = 7e-42 Identities = 113/121 (93%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||| ||| ||||||||||||||||| |||||| |||||||||| || ||||| | Sbjct 19746667 GTACAAAGGACAGAGACGTAGTCAACGCGAG-TTGATGGCTCGCGCTTATTAAGAATT-C 19746610 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 19746609 CTCGTTGAAGACCAACAATTGCAATGATCTATTCCCATCACGATGAAATTTCAAAGATTA 19746550 Query 121 C 121 | Sbjct 19746549 C 19746549 >seq10998 Length=452 Score = 376 bits (416), Expect = 4e-102 Identities = 240/256 (94%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| | Sbjct 89 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTAGGCATT-C 146 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 147 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 206 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 207 CCCGGGCCTGTCGGCCAAGGT-ATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 265 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| | Sbjct 266 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCACACTTCCATTGCCTAAACG 325 Query 241 GCCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 326 ACAATAGTCCCTCTAA 341 >seq20771 Length=8861 Score = 336 bits (372), Expect = 3e-90 Identities = 232/256 (91%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | Sbjct 7381 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTTGCGCTTACTAGGAATT-C 7324 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 || ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 7323 CTTGTTGAAGACCAACAATTGCAATGATTTATCCCCATCACAATGAAATTTCAAAGATTA 7264 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || || |||||||||| | || ||| ||||||||||||||||||| || |||||||||| Sbjct 7263 CCTGGGCCTGTCGGCCTATGT-ATAAACTCGTTGAATACATCAGTTTA--GCGCGTGCGG 7207 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 |||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||| Sbjct 7206 CCCAAAACATCTAAGGGCATCATAGACTTGTTATTGCCTCAAACTTCCTTGGCCTAAACA 7147 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 7146 GCCATAGTCCCTCTAA 7131 >seq18993 Length=384 Score = 141 bits (156), Expect = 1e-31 Identities = 97/105 (92%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| Sbjct 102 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACT--CGCTTACTAGGAA-TTC 47 Query 61 CTCGTT--GAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||||| |||||||||||||||||||| |||||||||| ||||| Sbjct 46 CTCGTTAAGAAGACCAACAATTGCAATGCTCTATCCCCAGCACGA 2 >seq27070 Length=439 Score = 123 bits (136), Expect = 4e-26 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 148 CTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 207 ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 60 Query 208 CTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||| Sbjct 61 CTGTTATTGCCTCAAACTTCC 81 >seq26815 Length=4303 Score = 96.9 bits (106), Expect = 5e-18 Identities = 63/68 (93%), Gaps = 1/68 (1%) Strand=Plus/Plus Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CT 247 |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| | Sbjct 428 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGT 487 Query 248 CCCTCGAA 255 ||||| || Sbjct 488 CCCTCTAA 495 Score = 84.2 bits (92), Expect = 3e-14 Identities = 56/61 (92%), Gaps = 1/61 (2%) Strand=Plus/Plus Query 196 GGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGA 254 ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||| | Sbjct 513 GGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTA 572 Query 255 A 255 | Sbjct 573 A 573 >seq3 Length=27950219 Score = 89.7 bits (98), Expect = 8e-16 Identities = 53/54 (98%), Gaps = 1/54 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGG 54 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 22703822 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGG 22703874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751797688265