Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2 129 3e-28 seq20771 107 1e-21 seq27070 80.6 1e-13 >seq2 Length=28351830 Score = 129 bits (142), Expect = 3e-28 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| ||||| ||| |||||| | Sbjct 2343824 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAATAGCAACATCCGC 2343882 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 2343883 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2343940 >seq20771 Length=8861 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||| |||||||| ||||||||| | |||| ||| ||||| Sbjct 6855 GAACCCAAAAACTTCGATTTCTCATAAGGTGCCAACGGAGTTCTAATAGCAACATTCGAT 6796 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| |||| |||| |||||| |||||||||||||||||||||| Sbjct 6795 GATCCCTGGTCGGCATCATTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 6739 >seq27070 Length=439 Score = 80.6 bits (88), Expect = 1e-13 Identities = 54/60 (90%), Gaps = 3/60 (5%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||||||||||||||||||||||| | | |||||||||| Sbjct 383 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAGA---AAAACATCGCCC 439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278327517690