Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq2 203 6e-50 seq7 154 3e-35 seq20751 75.2 2e-11 >seq2 Length=28351830 Score = 203 bits (224), Expect = 6e-50 Identities = 183/226 (81%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 94 GTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATAGAATAGGACGTGC 152 ||| |||||||| |||| |||| | |||||||||||||| |||| | |||||| | | Sbjct 2344165 GTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTT-C 2344107 Query 153 GGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGT 212 | | ||||| |||||| | ||| || ||||||||||| ||||| ||||||||| | Sbjct 2344106 GATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCAT 2344047 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || |||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 2344046 TCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAG 2343987 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || |||||||||||||||||||||| ||||||||||| |||| Sbjct 2343986 CATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 2343942 Score = 118 bits (130), Expect = 2e-24 Identities = 122/157 (78%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 2344331 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 2344272 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 2344271 GGGATAACATCATAGGA-TTTCGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 2344213 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTC 227 ||| ||||| ||||||||| | ||||| || ||| Sbjct 2344212 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTC 2344176 >seq7 Length=29178675 Score = 154 bits (170), Expect = 3e-35 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||| |||| |||||| |||| |||||||| |||| |||| | |||||||||||| Sbjct 9371668 CTGTTACCATGAAGAAATTAAAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 9371727 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | || || | || | ||||| |||||| | || || |||||||| Sbjct 9371728 GGGATAACATCATCAGATTT-CGATCCTATTGTGTTGGCCTTCGTGATCGGAGTAATGAT 9371786 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | |||||||| |||| | |||| || |||||||||||||||||||||||||| Sbjct 9371787 TAACATGGATAGTCAGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 9371846 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 ||||| ||| ||||||||||| || |||||| Sbjct 9371847 AAAAGACGAACAACTGCGAAAGCATTTCCCAAGG 9371880 >seq20751 Length=860 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 2/68 (3%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACC-GCCGTA 185 |||||||||||| ||||||||| | |||||||||||||||||||| || ||| | ||| Sbjct 389 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCAGAACCAGAGGTA 447 Query 186 ATGATTAA 193 |||||||| Sbjct 448 ATGATTAA 455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914945839808