Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq11647 394 4e-107 seq2 196 2e-47 seq6 158 5e-36 seq617 105 3e-20 >seq11647 Length=355 Score = 394 bits (436), Expect = 4e-107 Identities = 267/297 (90%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 388 GGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGC 447 |||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 1 GGCGTAATGGGTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCTATGC 60 Query 448 GAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGA 507 ||||||||||||| |||||| | |||| |||||||||||||| ||||| |||||| | Sbjct 61 GAGTGTTTGGGTGGTAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCCCTTT 120 Query 508 GGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGT 566 ||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 121 GGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTA-GAGCATAGCTGT 179 Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 180 CGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTG 239 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||||| | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 240 GAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 296 >seq2 Length=28351830 Score = 196 bits (216), Expect = 2e-47 Identities = 203/261 (78%), Gaps = 9/261 (3%) Strand=Plus/Minus Query 427 CAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCGTGCG-CGTAATGAAAG 484 |||||||||| |||| | ||||||| ||||| |||||||| | || || ||| Sbjct 2354064 CAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGTAAGGCGCAAGGAAGC 2354005 Query 485 TGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT-- 542 ||| || | || ||| ||||||||| ||||||| | |||| |||| || Sbjct 2354004 TGATTGGCGA---GATCCCTCACGGGTGCACCGCCGACCGACCTTGAT--CTTCAGAGAA 2353950 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 || || |||| |||||| |||| |||||||||||||||||||||||||||||| || Sbjct 2353949 GGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGG 2353890 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | ||||||||||||||||||||||||||| ||||||| | ||| ||||||||||| |||| Sbjct 2353889 GCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGT 2353830 Query 663 CAAATTTGGGTATAGGGGCGA 683 | | |||||||||||||||| Sbjct 2353829 CTGACTTGGGTATAGGGGCGA 2353809 Score = 152 bits (168), Expect = 2e-34 Identities = 128/157 (82%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43 TCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATT 102 ||| |||||||||||||||||| | || ||| |||||||| | || || ||||||||| Sbjct 2355001 TCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGCTAAATATG 2354942 Query 103 GGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGA 162 ||| |||||||||||||| ||||||| | || |||||||||||| |||||| ||||| Sbjct 2354941 GGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTTTGAAAAGA 2354882 Query 163 GAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| ||| || | ||||||||| | ||||||||| Sbjct 2354881 GAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 2354845 Score = 143 bits (158), Expect = 1e-31 Identities = 115/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 2341525 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 2341466 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 2341465 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 2341406 Query 155 TGGAAAGAGAGTTAAAAAG 173 || ||||||||| ||| || Sbjct 2341405 TGAAAAGAGAGTCAAAGAG 2341387 Score = 95.1 bits (104), Expect = 5e-17 Identities = 132/180 (73%), Gaps = 9/180 (5%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 2354338 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 2354279 Query 464 AACCCGT-GCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| ||| || ||| ||| || | || ||| ||||||||| |||| Sbjct 2354278 AACCCGTAAGGCGCAAGGAAGCTGA---TTGGCGAGATCCCTCACGGGTGCACCGCCGAC 2354222 Query 523 CGATCCTGATGTCTTC--GGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||| | ||| ||||| || || || |||| |||||| |||| ||||||||||||| Sbjct 2354221 CGACCTTGA--TCTTCAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 2354164 >seq6 Length=37079636 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || | Sbjct 7655308 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGT 7655249 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || ||||||||||||||||| Sbjct 7655248 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGCACTT 7655189 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||| ||| Sbjct 7655188 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGATGCG 7655144 >seq617 Length=74121 Score = 105 bits (116), Expect = 3e-20 Identities = 141/191 (74%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 427 CAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCGTGCG-CGTAATGAAAG 484 |||||||||| |||| | ||||||| ||||| |||||||| | || || ||| Sbjct 74041 CAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTAAACCCGTAAGGCGCAAGGAAGC 73982 Query 485 TGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT-- 542 ||| || | || ||| ||||||||| ||||||| | |||| |||| || Sbjct 73981 TGATTGGCGA---GATCCCTCACGGGTGCACCGCCGACCGACCTTGAT--CTTCAGAGAA 73927 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 || || |||| |||||| |||| |||||||||||||||||||||||||||||| || Sbjct 73926 GGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATGCCTGAGCGGG 73867 Query 603 GTGAAGCCAGA 613 | ||||||||| Sbjct 73866 GCGAAGCCAGA 73856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079404312050