Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq27070 354 1e-95 seq2 307 2e-81 seq20771 277 3e-72 seq10998 226 5e-57 seq15705 221 2e-55 seq26815 150 3e-34 >seq27070 Length=439 Score = 354 bits (392), Expect = 1e-95 Identities = 233/256 (91%), Gaps = 1/256 (0%) Strand=Plus/Plus Query 3 CTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 62 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCGTTGGCTCTGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGAC 60 Query 63 CTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA 122 ||||||||||||||||||||||| |||| || ||| ||||||||||||||||||| || | Sbjct 61 CTGTTATTGCCTCAAACTTCCATCGGCTTGA-GCCGATAGTCCCTCTAAGAAGCCGGCGA 119 Query 123 CCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAAC 182 || ||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 120 CCCGCCAAAGCTAGCCTGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGCAATTAAG 179 Query 183 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAA 242 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 180 CAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAA 239 Query 243 GAGCTATCAATCTGTC 258 ||||| |||||||||| Sbjct 240 GAGCTCTCAATCTGTC 255 >seq2 Length=28351830 Score = 307 bits (340), Expect = 2e-81 Identities = 224/259 (86%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2343329 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2343388 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 2343389 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 2343448 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 2343449 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 2343508 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2343509 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 2343568 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 2343569 AAAGAGCTCTCAGTCTGTC 2343587 >seq20771 Length=8861 Score = 277 bits (306), Expect = 3e-72 Identities = 220/260 (85%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||| ||||||| ||||||||| ||||||||||||||||| ||| Sbjct 7238 ACTCGTTGAATACATCAGTTTAGCGCG--TGCGGCCCAAAACATCTAAGGGCATCATAGA 7181 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGA-AGCCAATAGTCCCTCTAAGAAGCCAGC 120 | |||||||||||||||||||| | | || | ||||| |||||||||||||||||| | Sbjct 7180 CTTGTTATTGCCTCAAACTTCCTTGGCCTAAACAGCCA-TAGTCCCTCTAAGAAGCCGTC 7122 Query 121 CACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | || | || | | |||| |||||||||| ||||||||||||||| |||||| Sbjct 7121 CGTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGTTGAGGTCTCGTTCGTTAACGGAAT 7062 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 7061 TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACTCATAGAATCAA 7002 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 7001 GAAAGAGCTCTCAATCTGTC 6982 >seq10998 Length=452 Score = 226 bits (250), Expect = 5e-57 Identities = 186/223 (83%), Gaps = 5/223 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 232 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 291 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---A 118 ||||||||||||||| |||||||||| || | | ||||||||||||||||||| | | Sbjct 292 CCTGTTATTGCCTCACACTTCCATTGCCTAAACGACAATAGTCCCTCTAAGAAGTCAGGA 351 Query 119 GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 | ||| | | || | | |||||||||||| | ||||||||||||||| |||||| Sbjct 352 GTGTTCAAGAAGA-ACGCT-TGACTATTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAAT 409 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 |||| ||||| || |||||||||||||||||||||||||| Sbjct 410 CAACCTGACAAGGCAACCCACCAACTAAGAACGGCCATGCACC 452 >seq15705 Length=542 Score = 221 bits (244), Expect = 2e-55 Identities = 169/199 (85%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | || | | | ||||||||||||||||||| ||| Sbjct 1 CCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAAGCCGGCC 60 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 || | || | | |||| |||||||| | ||||||||||||||| ||||||| Sbjct 61 GTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 120 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 180 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 181 AAAGAGCTCTCAGTCTGTC 199 >seq26815 Length=4303 Score = 150 bits (166), Expect = 3e-34 Identities = 127/155 (82%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 51 GGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTA 110 ||||||||||||||||||||||||||||||||| | | || | | | |||||||||||| Sbjct 513 GGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTA 572 Query 111 AGAAGCCAGCCACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCG 168 ||||||| ||| || | || | | |||| |||||||| | |||||||||||| Sbjct 573 AGAAGCCGGCCGTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCG 632 Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAAC 203 ||| |||||||||||||||||||| |||||||||| Sbjct 633 TTAACGGAATTAACCAGACAAATCGCTCCACCAAC 667 Score = 96.9 bits (106), Expect = 6e-18 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 44 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGT 103 |||||||||||||||||||||||||||||||||||||||| | | || | | | ||||| Sbjct 428 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGT 487 Query 104 CCCTCTAAGAAGC 116 ||||||||||||| Sbjct 488 CCCTCTAAGAAGC 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796585635651