Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2 394 2e-107 seq8 381 1e-103 seq7 381 1e-103 seq16120 206 5e-51 seq10494 111 3e-22 >seq2 Length=28351830 Score = 394 bits (436), Expect = 2e-107 Identities = 256/280 (91%), Gaps = 1/280 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 2350694 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 2350752 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 2350753 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 2350812 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2350813 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 2350872 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 2350873 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 2350932 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 |||||| ||| || |||||||||||||||||||| ||||| Sbjct 2350933 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTC 2350972 Score = 154 bits (170), Expect = 3e-35 Identities = 97/105 (92%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC 248 ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| | Sbjct 2350983 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCC 2351042 Query 249 GAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || || |||||||||||||||||||| |||||| |||| |||||| Sbjct 2351043 GAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 2351087 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/75 (84%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| | | | || ||| ||||||||||||||||||||||||||||| Sbjct 2422061 TACTAGGTTGAATTACTTTCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 2422003 Query 61 TGACGGTCTAAACCC 75 ||| |||||||||| Sbjct 2422002 CGACAGTCTAAACCC 2421988 >seq8 Length=40886855 Score = 381 bits (422), Expect = 1e-103 Identities = 261/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||| ||||| Sbjct 28412035 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTATCTCA 28412093 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| || Sbjct 28412094 CGACGGTCTAAACCCAGCTCGCGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 28412153 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 28412154 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTCT 28412213 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| | Sbjct 28412214 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTTTGACACATCTAGCTT 28412273 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| || || |||||||||||||||||||| |||||| |||| |||||| Sbjct 28412274 CAAATTCTGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 28412326 Score = 141 bits (156), Expect = 2e-31 Identities = 90/98 (92%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC 255 |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| || | Sbjct 28412389 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTC 28412448 Query 256 TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||||||| |||||| |||| |||||| Sbjct 28412449 TAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 28412486 >seq7 Length=29178675 Score = 381 bits (422), Expect = 1e-103 Identities = 261/293 (89%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | || || |||||||||||||||||||||||||||||| Sbjct 15887913 TACTAGGTTGAATTACTATTGCGACG-CGATCATCAGTAGGGTAAAACTAACCTGTCTCA 15887855 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||| ||||||||||| ||||||||||||||| |||||||||||||||||| ||| || Sbjct 15887854 CGACAGTCTAAACCCACCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 15887795 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 15887794 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 15887735 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 15887734 GAACGCTTGGCTACCACAAGCCAGTTATCCCTGTGGTAACTTTTCTAACACCTCTAACAT 15887675 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||| ||||| || ||||||||| || ||||||||||||| |||| |||||| Sbjct 15887674 CAAAATTCGAAGGTCTAAAGGATTTATTGGCCACACTTTCACGGTTCGTATTC 15887622 >seq16120 Length=260 Score = 206 bits (228), Expect = 5e-51 Identities = 143/161 (89%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| || | | || ||| ||||||||||||||||||||||||||||| Sbjct 160 TACTAGGTTGAATTACTATCGCGACG-CGGGCATCAGTAGGGTAAAACTAACCTGTCTCA 102 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 101 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 42 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGAT 161 |||||||||| |||||||||||||||||||||||||||| Sbjct 41 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGAT 1 >seq10494 Length=509 Score = 111 bits (122), Expect = 3e-22 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| |||||||||||| || ||| ||||||||||||| ||||| |||||||||| Sbjct 427 TACTAAGCTGAATTACCATTGCGGTGACATTCATCAGTAGGGT-AAACT-ACCTGTCTCA 484 Query 61 TGACGGTCTAAACCCAGCTCACGTT 85 |||||||||||||||||||||||| Sbjct 485 CGACGGTCTAAACCCAGCTCACGTT 509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854162724576