Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 4e-15 >seq4 Length=23266485 Score = 87.8 bits (96), Expect = 4e-15 Identities = 162/224 (72%), Gaps = 14/224 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||| || | ||||||||||| |||||| ||||| | Sbjct 17530229 CCACAACTCAT-CCGCTGATTTTAACATC---AGTCGGTTCGGACCTCCACTTAGT-TTC 17530175 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||||| |||| |||| ||||| || ||| | |||||||| | | ||| Sbjct 17530174 ACCCAA-GTTTCATCCTGGTCATA-GATAGGTCACCCAG-GTTCGGGTCCA-TAAGCAGT 17530119 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| ||||||||| |||||||||| |||| || ||| |||| | Sbjct 17530118 GAC-AATTGCCCTATGAAGACTCGC-TTTCGCTACGGCTCCGGTAGGTTCCCTTAA-CCA 17530062 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGC 230 ||||||| || |||||| | | |||| | ||| ||| |||| Sbjct 17530061 AGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGC 17530018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241255195264