Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq18993 91.5 9e-17 seq10998 77.0 2e-12 seq3 75.2 7e-12 seq2 75.2 7e-12 seq20771 71.6 8e-11 >seq18993 Length=384 Score = 91.5 bits (100), Expect = 9e-17 Identities = 91/112 (81%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 13 CCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTA 72 ||||| ||| | ||| || ||||| || |||| |||| |||||| || || |||||| Sbjct 175 CCGTT-GCCAGCTCCCGAATACCAATCCC--AAGTCCTCATTAAGCCGTT-CAATCGGTA 120 Query 73 GTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 | | ||||||||||| |||||||||||||||||||||| | |||||| |||| Sbjct 119 GGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGAGCT 70 >seq10998 Length=452 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGC 123 || ||||||| | ||||||||||| |||||||||||||||||||||||| |||||| ||| Sbjct 63 CAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACGCGAGC 120 Query 124 T 124 | Sbjct 121 T 121 >seq3 Length=27950219 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 22703794 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 22703851 Query 122 GCT 124 ||| Sbjct 22703852 GCT 22703854 >seq2 Length=28351830 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 2342983 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 2343040 Query 122 GCT 124 ||| Sbjct 2343041 GCT 2343043 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 2343158 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 2343215 Query 122 GCT 124 ||| Sbjct 2343216 GCT 2343218 >seq20771 Length=8861 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | |||| |||||| |||||||||||||||||||||| | |||||| | Sbjct 7409 TTCAATCGGTAGGA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 7352 Query 122 GCT 124 ||| Sbjct 7351 GCT 7349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300721685780