Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-18 seq7 95.1 1e-17 >seq2 Length=28351830 Score = 98.7 bits (108), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 37 TCAAAGCAGGCCTTTGCTC-GAATACATTACCATGGAATAATAGAATAGGACGTGCGGTT 95 |||||||| |||| |||| | |||||||| ||||| |||| | |||||| | || | Sbjct 2344161 TCAAAGCAAGCCTACGCTCTGTATACATTAGCATGGGATAACATCATAGGATTT-CGATC 2344103 Query 96 CTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAG 155 ||||| ||| || | ||| || |||||||| || | ||| ||||||||| | | Sbjct 2344102 CTATTGTGTTGGCCTTCGGGATCGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCG 2344044 Query 156 TATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 |||| || |||| ||||||||||||||||||||| Sbjct 2344043 TATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2344009 >seq7 Length=29178675 Score = 95.1 bits (104), Expect = 1e-17 Identities = 132/181 (73%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||| |||| |||||| || | |||||||| |||| |||| | |||||||| ||| Sbjct 9371668 CTGTTACCATGAAGAAATTAAAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 9371727 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | || || | || | ||||| ||| || | || || ||||||| Sbjct 9371728 GGGATAACATCATCAGATTT-CGATCCTATTGTGTTGGCCTTCGTGATCGGA-GTAATGA 9371785 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | |||||||| |||| | |||| || |||| |||||||||||||||||||| Sbjct 9371786 TTAACATGGATAGTCAGGGGCATTCATATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 9371845 Query 190 T 190 | Sbjct 9371846 T 9371846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511862255840