Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10998 325 7e-87 seq2 316 4e-84 seq27070 282 8e-74 seq20771 253 4e-65 seq18993 136 7e-30 seq26815 93.3 8e-17 seq3 84.2 4e-14 >seq10998 Length=452 Score = 325 bits (360), Expect = 7e-87 Identities = 263/312 (84%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTT--TGGCGGGTCGCCGGCTTCTT 77 || |||||||| | |||||||||||| || || ||| || || | | |||||| Sbjct 398 GAACGAGACCTCAGCCTGCTAAATAGTCAAGCGTTCTTCTTGAACACTC-CTGACTTCTT 340 Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||||||| | | | || | |||||||| ||||||||||||||||||||||||||| Sbjct 339 AGAGGGACTATTGTCGTTTAGGCAATGGAAGTGTGAGGCAATAACAGGTCTGTGATGCCC 280 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||||||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct 279 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTAT-ACCTTGG 221 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||||||| Sbjct 220 CCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAATTG 162 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 ||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 161 TTGGTCTTCAACGAGGAATGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGATTACGTCC 102 Query 317 CTGCCCTTTGTA 328 |||||||||||| Sbjct 101 CTGCCCTTTGTA 90 >seq2 Length=28351830 Score = 316 bits (350), Expect = 4e-84 Identities = 262/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 2343496 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 2343441 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 2343440 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 2343381 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||| || ||| Sbjct 2343380 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTAT-ACC 2343322 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 2343321 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 2343263 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 2343262 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 2343203 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 2343202 GTCCCTGCCCTTTGTA 2343187 Score = 158 bits (174), Expect = 2e-36 Identities = 116/134 (87%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 195 GGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAAT 254 ||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||||| Sbjct 2343144 GGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCAAT 2343086 Query 255 TATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGT 314 | ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||| Sbjct 2343085 TGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGT 2343026 Query 315 CCCTGCCCTTTGTA 328 |||||||||||||| Sbjct 2343025 CCCTGCCCTTTGTA 2343012 Score = 116 bits (128), Expect = 7e-24 Identities = 98/119 (82%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 210 GTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACG 269 |||||||| | ||| | ||||| |||| ||||| |||||||||| ||| ||||||||| Sbjct 19746549 GTAATCTT-TGAAATTTCATCGTGATGGGAATAGATCATTGCAATTGTTGGTCTTCAACG 19746607 Query 270 AGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| | || |||||||| | ||||| | |||||||| |||||| ||| |||||||| Sbjct 19746608 AGGAATTCTTAATAAGCGCGAGCCATCAACTCGCGTTGACTACGTCTCTGTCCTTTGTA 19746666 >seq27070 Length=439 Score = 282 bits (312), Expect = 8e-74 Identities = 161/164 (98%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 164 GAACGAGACCTTAACCTGCTAAATAGCCAGGCTAGCTTTGGCGGGTCGCCGGCTTCTTAG 105 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 104 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 45 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 |||||||||||||||||||||||||||||||||||||||||||| Sbjct 44 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 1 >seq20771 Length=8861 Score = 253 bits (280), Expect = 4e-65 Identities = 250/317 (79%), Gaps = 17/317 (5%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| |||||||||| |||| | ||| | || ||| ||||| Sbjct 7073 GAACGAGACCTCAACCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGGA----CGGCT 7128 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | | | | ||| | |||||||||||||||||||| |||| ||| Sbjct 7129 TCTTAGAGGGACTATGGCTGTTTAGGCCAA-GGAAGTTTGAGGCAATAACAAGTCTATGA 7187 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 |||||||||||||| |||||||||||||| || ||||| | ||||||||| || || Sbjct 7188 TGCCCTTAGATGTTTTGGGCCGCACGCGC--TAAACTGATGTATTCAACGAGTTTAT-AC 7244 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 | ||||| ||| | ||||||||| | ||| | | ||| |||||||| | |||||| Sbjct 7245 ATAGGCCGACAGGCCCAGGTAATCTT-TGAAATTTCATTGTGATGGGGATAAATCATTGC 7303 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| |||||||| |||||| |||||||||||| ||||||||| |||||||| || Sbjct 7304 AATTGTTGGTCTTCAACAAGGAATTCCTAGTAAGCGCAAGTCATCAGCTCGCGTTGACTA 7363 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 7364 CGTCCCTGCCCTTTGTA 7380 >seq18993 Length=384 Score = 136 bits (150), Expect = 7e-30 Identities = 93/103 (90%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTC--AACGAGGAATGCCTAGTAAG 285 |||||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| Sbjct 1 GTCGTGCTGGGGATAGAGCATTGCAATTGTTGGTCTTCTTAACGAGGAATTCCTAGTAAG 60 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || ||||||| |||||||| ||||||||||||||||||| Sbjct 61 CGAGT--CATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 101 >seq26815 Length=4303 Score = 93.3 bits (102), Expect = 8e-17 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 71 GCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||||||| | | | || | | ||||||||||||||||||||||||||| Sbjct 500 GCTTCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGT 441 Query 130 GATGCCCTTAGAT 142 ||||||||||||| Sbjct 440 GATGCCCTTAGAT 428 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/123 (76%), Gaps = 11/123 (9%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 631 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 576 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 575 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 516 Query 133 GCC 135 ||| Sbjct 515 GCC 513 >seq3 Length=27950219 Score = 84.2 bits (92), Expect = 4e-14 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 275 TGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 22703876 TGCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 22703823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946936953088