Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2 459 9e-127 seq16763 246 1e-62 seq1985 233 6e-59 seq8 192 2e-46 >seq2 Length=28351830 Score = 459 bits (508), Expect = 9e-127 Identities = 259/262 (99%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 259 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351589 CAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGA 2351648 Query 319 TTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGA 378 ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 2351649 TTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGA 2351708 Query 379 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351709 ATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAA 2351768 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351769 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 2351828 Query 499 TCAGAGCACTGGGCAGAAATCA 520 |||||||||||||||||||||| Sbjct 2351829 TCAGAGCACTGGGCAGAAATCA 2351850 Score = 289 bits (320), Expect = 9e-76 Identities = 219/253 (87%), Gaps = 9/253 (4%) Strand=Plus/Plus Query 121 CGGATCGGCCCGC-GAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCC 176 ||||||||||||| |||| | |||| ||| ||| || ||| | || || ||| Sbjct 2351331 CGGATCGGCCCGCCGAAGCAAGCCTTGGGTCCAAAAAGAGG--GGTAACACCCCGTCTCC 2351388 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG 236 | |||| || ||||||||| |||| ||| ||||||||||||||||||||||||| | Sbjct 2351389 GATTCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA---G 2351445 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351446 CTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 2351505 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 2351506 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 2351565 Query 357 ATAGTAGATAGGG 369 |||||||| |||| Sbjct 2351566 ATAGTAGACAGGG 2351578 Score = 232 bits (256), Expect = 2e-58 Identities = 131/133 (98%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351861 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 2351920 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2351921 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 2351980 Query 523 TTGCGTCAACATC 535 |||||| | |||| Sbjct 2351981 TTGCGTTAGCATC 2351993 Score = 176 bits (194), Expect = 1e-41 Identities = 163/202 (81%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 2351121 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 2351180 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 2351181 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCCGGATC 2351240 Query 127 GGCCCG-CGAAGGA--CCTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCA 182 |||||| ||||| | |||| ||| ||| || ||| | || || |||| |||| Sbjct 2351241 GGCCCGCCGAAGCAAGCCTTGGGTCCAAAAAGAGG--GGTAACACCCCGTCTCCGATTCA 2351298 Query 183 TTGATTAAGTaaaaaaaCGATA 204 || ||||||||| |||| || Sbjct 2351299 CGGAGTAAGTAAAATAACGTTA 2351320 >seq16763 Length=284 Score = 246 bits (272), Expect = 1e-62 Identities = 139/141 (99%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 284 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 225 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 224 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 165 Query 515 AAATCACATTGCGTCAACATC 535 |||||||||||||| | |||| Sbjct 164 AAATCACATTGCGTTAGCATC 144 >seq1985 Length=1124 Score = 233 bits (258), Expect = 6e-59 Identities = 134/137 (98%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 166 TGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 107 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 106 CGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCAGAGCACTGGGCAGAA 47 Query 517 ATCACATTGCGTCAACA 533 ||||||||||||||||| Sbjct 46 ATCACATTGCGTCAACA 30 >seq8 Length=40886855 Score = 192 bits (212), Expect = 2e-46 Identities = 231/323 (72%), Gaps = 52/323 (16%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 28412520 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATA 28412579 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 28412580 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCCTCCGCCTGGATC 28412639 Query 127 GGCCCG--------------------------------------------CGAAGGA--C 140 |||||| ||||| | | Sbjct 28412640 GGCCCGCCGAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGCCGAAGCAAGC 28412699 Query 141 CTTAACGCCAGAAAATGGTCGGTGAAGACCAGT-TCCGCTTCATTGATTAAGTaaaaaaa 199 ||| ||| ||| | ||| | || || |||| |||| || ||||||||| || Sbjct 28412700 CTTGGGTCCAAAAA--GAAAGGTAATACCCCGTCTCCGATTCACGGAGTAAGTAAAATAA 28412757 Query 200 CGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTC 259 || ||| |||||||||||||||||||| | || |||||||||||| ||||||||||| Sbjct 28412758 CGTTAAAAGTAGTGGTATTTCACTTGCGTCAAA---GCTCCCACTTATACTACACCTCTC 28412814 Query 260 AAGTCATTTCACAAAGTCGGACT 282 ||||||||||||||||||||||| Sbjct 28412815 AAGTCATTTCACAAAGTCGGACT 28412837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634745888608