Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq10494 284 2e-74 seq2 107 3e-21 seq16120 87.8 3e-15 seq8 80.6 4e-13 seq10049 75.2 2e-11 >seq10494 Length=509 Score = 284 bits (314), Expect = 2e-74 Identities = 236/281 (84%), Gaps = 8/281 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| || |||||| |||| |||||| ||||||||||||||||||||| Sbjct 429 GTACGAGAGGAACCGCTGA-TTCAGA-TAAT-GGTTTTGGCGGCTGTCTGACCAGGCAGT 373 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 372 GCCGCGAAGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 313 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGG---CTTCGGCCCCG 177 ||| | || || | |||| ||||||||||||||||||||||||| || ||||| | Sbjct 312 GAAAGCGGCGAGTACCTCCCACACATCGTAGTCGGATACGAATAGGCCCCTAGGGCCCTG 253 Query 178 AACCTTAGCAGGCCGGCAACGGGCGTCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATT 237 || ||||||||| ||||| || || | ||| | ||| ||| ||||| || || Sbjct 252 AATCTTAGCAGGTTGGCAATGGTGCTCGGGGAGAAATCCCGGGTGCT-AGCTGACGTCTT 194 Query 238 GCAATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||||| |||||||| |||||||| |||||||| ||||| Sbjct 193 GCAATTT-ACCATGCGTGGGGATAAAACCTTTGCATACGAC 154 >seq2 Length=28351830 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2350696 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2350639 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 2350638 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2350579 Query 121 GAA 123 ||| Sbjct 2350578 GAA 2350576 Score = 93.3 bits (102), Expect = 7e-17 Identities = 90/113 (80%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| | || ||| | | ||||||| | ||| || ||| || |||| Sbjct 2422059 GTATGAGAGGAACTGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 2422116 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | |||||||||||| | ||||||||||| ||||||||||||||||||||||| Sbjct 2422117 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATC 2422169 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 |||||||||||| | ||||||||||| ||||||||||||||||||||||||| Sbjct 2688138 CGCGAAGCTACCGTGCGCTGGATTATGATTGAACGCCTCTAAGTCAGAATCCAT 2688191 >seq16120 Length=260 Score = 87.8 bits (96), Expect = 3e-15 Identities = 84/105 (80%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 158 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 215 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAG 105 | |||||||||||| | ||||||||||| ||||||||||||||| Sbjct 216 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAG 260 >seq8 Length=40886855 Score = 80.6 bits (88), Expect = 4e-13 Identities = 93/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||| | | ||||||| | | || ||| || |||| Sbjct 28412037 GTACGAGAGGAACCGTTG-ATTC-GCACAATTGGTCATCACACTTGGTTGAAAAGCCAGT 28411980 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | | |||||||||| | ||||| ||||| |||||| ||||||||| ||||||| || | Sbjct 28411979 GGCACGAAGCTACCGTGCGCTGGTTTATGACTGAACTCCTCTAAGTTAGAATCCGGGCTA 28411920 Query 121 GAA 123 ||| Sbjct 28411919 GAA 28411917 >seq10049 Length=79565 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122 || ||||||||| | ||||||||||| |||||||||||||||||||||||| || ||| Sbjct 42350 CGGGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGA 42291 Query 123 A 123 | Sbjct 42290 A 42290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818979609344