Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2 376 8e-102 seq7 329 1e-87 seq6800 86.0 2e-14 seq8 82.4 2e-13 >seq2 Length=28351830 Score = 376 bits (416), Expect = 8e-102 Identities = 293/342 (86%), Gaps = 12/342 (4%) Strand=Plus/Plus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2344940 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCG 2344999 Query 232 TCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCG 288 ||||| || | ||||||||||||| ||| |||||| |||||||| || |||| | | Sbjct 2345000 TCGCCAGCACAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGG 2345057 Query 289 AAG----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTA 343 || |||| | ||||||||||||||| || ||||||| ||||||||||||| | Sbjct 2345058 CAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTT 2345117 Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||| ||||||||||||||||||| |||||||||| ||||| || ||| |||||| |||| Sbjct 2345118 GCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAACAAAC 2345176 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACA 462 ||||||||||||||||||||||||||||||||| || | ||| | | ||||||| ||| Sbjct 2345177 TATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACA 2345236 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||||| Sbjct 2345237 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 2345278 Score = 293 bits (324), Expect = 7e-77 Identities = 184/197 (93%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2344727 CCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 2344786 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| Sbjct 2344787 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTAGG 2344846 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC- 241 ||||||||||||||||||||||||||||||||||||||||||||| | ||||| || | Sbjct 2344847 CCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCACA 2344906 Query 242 AAGGCCATGCGATTCGT 258 ||||||||||||| ||| Sbjct 2344907 AAGGCCATGCGATCCGT 2344923 Score = 248 bits (274), Expect = 3e-63 Identities = 151/160 (94%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 2344555 GTACTCATTCCAATTACCAGACTCGAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 2344614 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2344615 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2344674 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGT 160 ||||||||||||||||||||||||||||||||||| |||| Sbjct 2344675 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGT 2344714 Score = 91.5 bits (100), Expect = 4e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2345335 ATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 2345387 >seq7 Length=29178675 Score = 329 bits (364), Expect = 1e-87 Identities = 242/279 (87%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| | |||||| || |||| |||||||||||||||||| Sbjct 9371444 GTACTCATTCCAATTACCTGACTCGAAAGAGTCCAGTATTGTTATTTATTGTCACTACCT 9371385 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| ||||||||||||||||| | |||||||||||||||||||||||||| || Sbjct 9371384 CCCCGTGTCAAGATTGGGTAATTTGCGCTCTTGCTGCCTTCCTTGGATGTGGTAGCCATT 9371325 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||| || ||||||||| Sbjct 9371324 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCATTACCACCATGGTA 9371265 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||| | || |||||||||||| | || || | Sbjct 9371264 GGCCACTATCCTACCATCGAAAGTTGATAAGACATAAATTTGAATGATGCGTCACCAGTA 9371205 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTAT-GAATCACC 277 | ||||||||||||| ||| |||||| || ||||| || Sbjct 9371204 CAAAGGCCATGCGATCCGTCGAGTTATCATGGAATCTCC 9371166 >seq6800 Length=341 Score = 86.0 bits (94), Expect = 2e-14 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 50 >seq8 Length=40886855 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || |||||| ||||| ||| ||| | ||| ||||||||| || Sbjct 24517227 TTTTATCTAATAAATGCATCCCTTCTAGAAGTAGGGATTTGTTGCACGTATTAGCTATAT 24517286 Query 361 AATTACCACGGTTATCC 377 |||||| |||||||||| Sbjct 24517287 AATTACTACGGTTATCC 24517303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509980546816