Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq20831 473 1e-128 seq3 435 3e-117 seq7 170 2e-37 seq2 127 2e-24 seq6 100 3e-16 seq1 100 3e-16 >seq20831 Length=3535 Score = 473 bits (524), Expect = 1e-128 Identities = 550/742 (74%), Gaps = 0/742 (0%) Strand=Plus/Minus Query 159845 GGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTC 159904 || ||||| || || |||||||||| || | ||| | |||||| | || || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 159905 GCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCA 159964 || ||||| |||||||| || || || || ||||| || |||||||| || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 159965 CTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGT 160024 || | ||||| ||||| || || || ||||| || |||| |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 160025 CTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGT 160084 | || || || || || |||||||| ||||| | || || ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 160085 CCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAG 160144 |||| |||| | || | ||||| | | || | | ||||||||||||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 160145 TGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCA 160204 |||||||| || |||||| ||||||||||| ||||| ||||||||| || ||||| Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383 Query 160205 GTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGAT 160264 || || ||||| ||||||| ||| | | ||||| | ||||| || ||| || ||| Sbjct 382 GTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGAT 323 Query 160265 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACAC 160324 | ||||||||| || |||||||||||||| |||| |||| |||||||||| || || ||| Sbjct 322 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 263 Query 160325 AATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTG 160384 || || |||||||| || || |||||| | ||||| ||||| |||||||| || || | Sbjct 262 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTA 203 Query 160385 TTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACT 160444 || |||||||||||| || |||| ||||||||| | |||| || || ||||||| | Sbjct 202 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 143 Query 160445 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCA 160504 || || || | ||||||| ||||| ||||| ||||| ||||||||||| || || Sbjct 142 GAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 83 Query 160505 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT 160564 || ||||| || || || || ||||||||||||||||| || ||||| || || ||| Sbjct 82 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCT 23 Query 160565 CTGCACTTCTTCCTCGCTGCTT 160586 | || |||||| | || |||| Sbjct 22 TTACATTTCTTCTTAGCGGCTT 1 >seq3 Length=27950219 Score = 435 bits (482), Expect = 3e-117 Identities = 688/979 (70%), Gaps = 5/979 (1%) Strand=Plus/Minus Query 161551 TTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGC 161610 || |||||||| || |||||||| || | || ||||| ||| ||| | ||| | || Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807 Query 161611 GGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCC 161670 | |||| | || || | || || | || |||||||| |||||| | ||||||||| Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747 Query 161671 TATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGT 161730 ||| | || ||| |||||| || || || || ||||| ||| | | | | Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCA 12152687 Query 161731 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCA 161789 |||||| || || || || ||||||| ||| || ||| | ||||| | ||| || Sbjct 12152686 CATTCT-TTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCA 12152628 Query 161790 ACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCAT 161849 | | || || |||| | |||||| || ||| |||| ||||| || | || | || || Sbjct 12152627 ATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTAT 12152568 Query 161850 GCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTATTGCTT 161908 | | ||||| |||||||||||||| || || | | || ||||| ||||| || || | Sbjct 12152567 GTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGCCCTTATAATGCAATCGCAT 12152509 Query 161909 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGT 161968 |||||||||| || ||||||||||| ||| | || || ||||| ||||| || || Sbjct 12152508 TCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTG 12152449 Query 161969 CCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTAC 162028 |||||||| ||||| ||||| || || ||||| || | ||| | ||||| | | Sbjct 12152448 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCC 12152390 Query 162029 AAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGG 162088 |||| || || ||||||| | || || || || |||||||| |||| ||| | | | Sbjct 12152389 AAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCG 12152330 Query 162089 GTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATG 162148 | | ||| |||| | |||||||| |||| ||||| ||||| || | | |||||| Sbjct 12152329 GCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATG 12152270 Query 162149 GTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGA 162208 |||| |||||||| ||| |||||| || | || |||| || || ||||| || | Sbjct 12152269 GTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 12152210 Query 162209 TGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTT 162268 |||| || || ||||| || |||||| | |||| || |||||||| ||||| |||| Sbjct 12152209 TGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTT 12152150 Query 162269 GGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTA 162328 |||| ||||||| |||| | || || | || | ||| | |||| ||| || | || Sbjct 12152149 GGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAG 12152090 Query 162329 TTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAG 162388 | | || || ||| | || || |||| || ||||| || || ||||| | ||||||| Sbjct 12152089 TAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAG 12152030 Query 162389 CGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTC 162448 |||| ||| | ||||||| || ||| | || || ||||| || || || |||||| ||| Sbjct 12152029 CGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTC 12151970 Query 162449 GTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTC 162508 |||| ||| |||| | | ||| | || ||||| ||| || |||||| |||||| |||| Sbjct 12151969 GTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTC 12151910 Query 162509 TGCCTAGAGGTAACGCACT 162527 | || | || ||||| || Sbjct 12151909 TACCACGTGGAAACGCTCT 12151891 Score = 89.7 bits (98), Expect = 6e-13 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 162402 ATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGC 162461 || ||| || ||||| || || ||||| || || || |||||| ||||||| ||| |||| Sbjct 27467485 ATATGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGC 27467544 Query 162462 ACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAA 162521 | ||||| || ||||| ||| || ||||||||||||| ||||| || | || || Sbjct 27467545 GGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAA 27467604 Query 162522 CGCACTGTGAATGG 162535 ||| || | ||||| Sbjct 27467605 CGCTCT-TTAATGG 27467617 >seq7 Length=29178675 Score = 170 bits (188), Expect = 2e-37 Identities = 199/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 162028 CAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTG 162087 ||||| || || |||||||| || || || || |||||||| ||||| ||| | || Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 162088 GGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGAT 162147 || | ||| |||| | |||||||| |||| ||||| ||||| || | | ||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 162148 GGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCG 162207 ||||| |||||||| ||| |||||| || | || |||| || || ||||| || Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 162208 ATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGT 162267 ||||| || || ||||| || |||||||| ||||| || |||||||| ||||| ||| Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 162268 TGGTTGCATTTCTTTATGCTCTTCGTTCC 162296 ||||| |||||||||||| | || || || Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||| ||||| |||||||| | || || ||||| || ||||||||| Sbjct 3660660 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 3660601 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 | || || | ||||| ||||| || || ||| |||| ||||||||||| || | Sbjct 3660600 TCATGTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGT 3660541 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||||| |||||||| || ||| ||||||||| || || || | ||||||||| || Sbjct 3660540 TTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 3660481 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 3660480 TCTGATGTTACCATT 3660466 >seq6 Length=37079636 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 ||||| ||||| || | || || ||||| || ||||| |||||| || ||||| || Sbjct 23704724 GATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTTGC 23704783 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||||| || || ||||| ||||||||||| |||| || | || || || ||| Sbjct 23704784 AGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATCGAGAAAGGCAACGTTGACCAGTCT 23704843 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || ||||| || || |||| |||| || | |||| |||| || || ||| Sbjct 23704844 GATGGTTCGTTCCTTGAGGACCATCACTTTGAGAATGGTTATGTCTTGACTTGTGTGGCT 23704903 Query 161140 TATCC 161144 || || Sbjct 23704904 TACCC 23704908 >seq1 Length=25238555 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||| ||||| ||||| || | ||| || ||||| || ||||||||| Sbjct 6597806 TACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGACTTGCCTTACTCATGCCGTGCTGGT 6597865 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||||| || || ||||| | | ||| | || || || || || ||| Sbjct 6597866 TCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGCTCCGTTGACCAGTCCGACCAAAGC 6597925 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||| |||| || || ||| | || ||| | |||| | ||||| || ||||| || ||| Sbjct 6597926 TTCTTGGACGACGACCAAATGAAAGAAGGCTATGTCTTAACCTGTGTCGCTTACCCAACT 6597985 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 6597986 TCTGATGTCACCATT 6598000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551184596713800