Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq3 437 1e-117 seq20831 414 1e-110 seq7 176 6e-39 seq6 89.7 7e-13 >seq3 Length=27950219 Score = 437 bits (484), Expect = 1e-117 Identities = 710/1016 (70%), Gaps = 7/1016 (1%) Strand=Plus/Minus Query 189987 TTTGACATCCTTGATGACTGGCTTAAACGAGATC--GCTTTGTCTTTGTGGGTTGGTCTG 190044 ||||| || | ||||||||| | | ||| | ||||||| ||||| |||||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTT--ACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTG 12152845 Query 190045 GATTACTTCTTTTTCCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGT 190104 | || | || ||||| ||| ||| |||| | || | ||| | || || | || | Sbjct 12152844 GTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCT 12152785 Query 190105 TTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTTTC 190164 ||| || ||||| || || ||| | || ||| || | || ||| |||||| Sbjct 12152784 TTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTT 12152725 Query 190165 TTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 190224 || || || | || || |||||| || | | | |||||| | | |||| |||| Sbjct 12152724 AAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGG 12152665 Query 190225 GTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTG 190284 ||| |||| | ||| | ||||| | ||| ||| | || || |||| |||||||| Sbjct 12152664 GTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTG 12152605 Query 190285 TGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCAC 190344 | || ||| |||| ||||| || |||| | || ||| | ||||| |||||||| || | Sbjct 12152604 TTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTC 12152545 Query 190345 G-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTT 190403 | || || | | || ||||| ||||| || || ||||||||||| |||||||||||| Sbjct 12152544 GATCCGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTT 12152486 Query 190404 GTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTC 190463 ||| ||| | || || || || ||||||||||| |||||||||| ||||| || Sbjct 12152485 GTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 12152426 Query 190464 GGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTG 190523 ||||| || || || || || ||| |||| || || || || || ||||| |||| || Sbjct 12152425 GGTGTAGCGGCTATATTTCGATTCATCCTTTT-TTCCAAGGGTTTCATAATTGGATATTG 12152367 Query 190524 AACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATC 190583 ||||| || || |||||||| || | ||| | || || | || || || | || || Sbjct 12152366 AACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATT 12152307 Query 190584 CATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAA 190643 ||||||| |||||||| |||||||| | |||||||||||| ||||| || || Sbjct 12152306 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 12152247 Query 190644 GCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGG 190703 || || || | || |||| ||||| || ||||| |||||||| || ||||| || ||| Sbjct 12152246 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 12152187 Query 190704 TCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTT 190763 || || ||||||| ||||| || ||||| | ||||| ||||||| |||| | ||| Sbjct 12152186 TCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTT 12152127 Query 190764 GTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTT 190823 || | || | ||| | |||| | | | || | | || || ||| | ||||| Sbjct 12152126 GTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTA 12152067 Query 190824 CGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACT 190883 |||| |||||||| || ||||| || | | | ||||| |||||| | | || |||||| Sbjct 12152066 TGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACT 12152007 Query 190884 TTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGAT 190943 || | || |||||||| ||||| || |||||| ||||| | ||| |||| || | ||| Sbjct 12152006 TTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGAT 12151947 Query 190944 CAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 | || ||||| || || |||| | || || || | ||| | || |||||||| Sbjct 12151946 AAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 >seq20831 Length=3535 Score = 414 bits (458), Expect = 1e-110 Identities = 569/787 (72%), Gaps = 10/787 (1%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| | ||| | ||| ||| | || ||||| || | || ||||| ||||| || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 188911 ATGATCCCTACGCTTCTCG-CTGCAACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| ||| | | | ||||| | || || |||| || | ||||| || Sbjct 724 ATGATCCCTAC-CTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || ||||| |||||||| || || ||||| || |||| || || | || |||||||| Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 606 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 || || || ||||| || | ||| | || || |||||| | || || ||||| || Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 546 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 ||||||||| || || | ||||| ||||| |||||||| ||||||| |||| | || Sbjct 545 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 486 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCT---ACATGGGTCGTGAGTGGGAACTCTCTTA 189206 | ||||| | | || | || || | | |||||||||||||||||||| || Sbjct 485 TCTACACTTTTTACTTGG--TGTA-GCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTT 429 Query 189207 CCGTCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCAT 189265 |||||| ||||||||||||||||| ||| |||| || || || ||||||||||| ||| Sbjct 428 CCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAA 370 Query 189266 CCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGG 189325 | || || || || | || || |||||||||| ||| ||||| | ||||| | | Sbjct 369 CTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAG 310 Query 189326 GTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 189385 | ||| ||| || ||||||| ||| |||| ||||| || ||||||||||| || |||| Sbjct 309 GAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGC 250 Query 189386 ACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGC 189445 |||| || |||||| | || || || ||||| ||||| || || | || || |||| Sbjct 249 ACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGC 190 Query 189446 ATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACT 189505 ||||||| | || || ||| || | | |||||||| |||| || || || Sbjct 189 ATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATG 130 Query 189506 ATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATT 189565 | ||||||| || ||||||||||||||||| |||||||| || ||||||||||| |||| Sbjct 129 AAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATT 70 Query 189566 TCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCC 189625 | || || | |||||||||||||| |||||||| || ||||| | || |||||| Sbjct 69 TTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCT 10 Query 189626 TCGCTGC 189632 | || || Sbjct 9 TAGCGGC 3 >seq7 Length=29178675 Score = 176 bits (194), Expect = 6e-39 Identities = 202/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 190497 TTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATC 190556 || || || || ||||| ||||| |||||| || || |||||||| || || ||| | Sbjct 25949509 TTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTA 25949450 Query 190557 CTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAA 190616 ||||| | || || || | || || ||||||| |||||||| |||||||| | |||| Sbjct 25949449 CTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAA 25949390 Query 190617 GATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTAT 190676 |||||||| ||||| || || || || || | || |||| ||||| || ||| Sbjct 25949389 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTAT 25949330 Query 190677 TCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAG 190736 || |||||||| || ||||| || ||||| ||||||||||| ||||| || ||||| Sbjct 25949329 TCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAA 25949270 Query 190737 AGGTGGTTGCATTTCTTTATGCTCTTTGTTCC 190768 | ||||| |||||||||||| | ||||| || Sbjct 25949269 CGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 188875 AACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGC 188933 || || ||||| || | || ||||| ||||| ||||||| ||||| ||| | | | || Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTAC-CTTATTGACCGC 27053840 Query 188934 AACCATCTGCTTCATCGTCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCG 188993 ||| | || | |||| || | ||| | || || ||||| |||||||| || || Sbjct 27053839 AACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCG 27053780 Query 188994 CGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCC 189053 ||| | || |||| || || | ||||||||||| || || || ||||| || | || Sbjct 27053779 TGAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCC 27053720 Query 189054 TTCATCCAACGCAATTGGTCTTCACTTCTACCCCATCTGGGAAGC 189098 | | || || ||| || | || || ||||| ||||||||||| Sbjct 27053719 TACTTCAGCAGCTATT-GTTTGCATTTTTACCCGATCTGGGAAGC 27053676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633859887054000