Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq20831 518 4e-142 seq3 428 5e-115 seq7 219 5e-52 seq6 127 2e-24 >seq20831 Length=3535 Score = 518 bits (574), Expect = 4e-142 Identities = 570/756 (75%), Gaps = 2/756 (0%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACC 160658 |||||||||||| | || ||||| ||||| |||||||||| || | ||| | ||||| Sbjct 757 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 698 Query 160659 GTCTGCTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAA 160718 | ||||||| || ||| |||||||||| || || || || || ||||| |||||| Sbjct 697 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 638 Query 160719 CCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCT 160778 || ||| |||| || || | || |||||||| || || || ||||| || ||||| || Sbjct 637 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 578 Query 160779 TCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGG 160838 || || |||||| | || || ||||| || |||||||||||||| ||||||||||| Sbjct 577 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 518 Query 160839 CTCTACAATGGTGGTCCTTACCAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGC 160898 || ||||| || |||||||| |||| | || | ||||| | | || | || Sbjct 517 CTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGT 458 Query 160899 TACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC-GT 160957 || |||||||| |||||||||||| | ||| || || ||||| || ||||| ||| || Sbjct 457 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 399 Query 160958 TGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCA 161017 ||||||||| || |||||||| ||||| | ||| || ||| | | || || | ||||| Sbjct 398 TGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCA 339 Query 161018 AGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGT 161077 ||| ||| |||||||||||||| || || ||||||||||| |||||||| ||| |||| Sbjct 338 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 279 Query 161078 CTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGT 161137 |||||||| || |||||||| || |||||||| || |||||||| ||||| |||||||| Sbjct 278 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 219 Query 161138 CTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCG 161197 ||||| || || | || || ||||||||||| |||| |||||| || | | Sbjct 218 ATTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 159 Query 161198 TGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 161257 |||||||| || || || || || | ||||||| || || ||||||||||| || Sbjct 158 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAAC 99 Query 161258 CTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 161317 |||||||| || |||||||||||||| || || || ||||||||||||| ||| || Sbjct 98 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 39 Query 161318 CAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGC 161353 |||||| || ||||| || || |||||| | || || Sbjct 38 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 428 bits (474), Expect = 5e-115 Identities = 688/986 (70%), Gaps = 7/986 (1%) Strand=Plus/Minus Query 163921 GCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTG 163980 ||||||| ||||| ||||||||||| || | || ||||| ||| ||| | || | | Sbjct 12152868 GCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAG 12152809 Query 163981 GTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTA 164040 | | ||| | || ||| |||| ||||| || ||||| || || || | || || Sbjct 12152808 GGGATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGC---TA 12152752 Query 164041 GTTACCTT---GAGGGTGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTA 164097 ||| | | || ||| ||||| || || || | || || |||||| || | Sbjct 12152751 GTTCCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTT 12152692 Query 164098 TGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGT 164157 | | |||||| | | |||| ||||||| ||| | || | || || | | | |||| Sbjct 12152691 TAGCACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGT 12152632 Query 164158 GCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTT 164217 | ||| | || || |||| ||||||||| || || |||| |||| || | || ||| Sbjct 12152631 GTCAATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTT 12152572 Query 164218 TCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTG 164277 | ||| | || || |||||| |||| || || | || || || ||||| || | Sbjct 12152571 TTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCG 12152512 Query 164278 CGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAAT 164337 | ||||||||||| || ||||| ||||| || |||| || || || || || |||| Sbjct 12152511 CATTCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAAT 12152452 Query 164338 CTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCC 164397 || ||||||||||||| || ||||| || ||||| || || ||||| || | || Sbjct 12152451 CTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT- 12152393 Query 164398 TCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCC 164457 ||||||| || ||||| |||| | | ||||| || ||||||||||| || | || | | Sbjct 12152392 TCCAAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTAC 12152333 Query 164458 TTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAG 164517 | || | ||||| || || ||||||||||||||||| ||||| |||||||| ||||||| Sbjct 12152332 TCGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAG 12152273 Query 164518 ATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACT 164577 ||||||| ||||||| ||| || || | || ||||||| ||||| ||||| | Sbjct 12152272 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 12152213 Query 164578 CGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGC 164637 | |||||||| || |||||||| ||||| | | ||||| ||||||| |||||| | Sbjct 12152212 CAATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAAC 12152153 Query 164638 GTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTG 164697 ||||||| || |||| |||| | ||||| | || | || | |||| ||| || ||| Sbjct 12152152 GTTGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTG 12152093 Query 164698 GTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAG 164757 | | |||| || || | || || |||| ||||| || || || ||||| | | | Sbjct 12152092 GAGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTG 12152033 Query 164758 CAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGAC 164817 |||| || ||| | |||||||||| ||| |||| || || || || | || ||||| Sbjct 12152032 CAGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTA 12151973 Query 164818 TCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAG 164877 | ||||| |||||||| | |||| |||| || ||| || |||| | ||||| | Sbjct 12151972 TTCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGG 12151913 Query 164878 TTCTTCCGAGAGGTAACGCACTCTAA 164903 |||| || | || ||||| || ||| Sbjct 12151912 TTCTACCACGTGGAAACGCTCTTTAA 12151887 >seq7 Length=29178675 Score = 219 bits (242), Expect = 5e-52 Identities = 219/283 (77%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 164388 CTCTTGTTCCT--CCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTG 164445 |||||| | || |||||| || ||||| |||||| ||||| || ||||||||||| | Sbjct 25949520 CTCTTGGTTCTTTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAG 25949461 Query 164446 TTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATA 164505 | || || | || || | ||||| || || ||||||||||||||||| ||||| |||| Sbjct 25949460 TCGCCGGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATA 25949401 Query 164506 CTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGG 164565 |||| |||||||||||||| ||||||| ||| || || | || ||||||| | Sbjct 25949400 CTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTG 25949341 Query 164566 AAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTT 164625 |||| ||||| || |||||||| || |||||||| ||||| || || ||||| |||||| Sbjct 25949340 AAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTT 25949281 Query 164626 TCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCC 164668 | |||||| |||||||| || ||||||||| | ||||| || Sbjct 25949280 TTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 127 bits (140), Expect = 2e-24 Identities = 164/225 (73%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 160595 AAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGC 160654 ||| |||||||||||| | || ||||| ||||| ||||||| || || | ||| | || Sbjct 27053899 AAAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGC 27053840 Query 160655 AACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCG 160714 ||| | |||| || || ||| ||||| |||| || || || || || ||||| || Sbjct 27053839 AACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCG 27053780 Query 160715 TGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCC 160774 |||| | ||| |||| || || | ||||||||||| || || || ||||| || |||| Sbjct 27053779 TGAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCC 27053720 Query 160775 TTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGC 160819 | |||| || ||| || | || || ||||| || |||||||| Sbjct 27053719 TACTTCAGCAGCTATT-GTTTGCATTTTTACCCGATCTGGGAAGC 27053676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559133836276400