Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq8142 295 1e-77 seq18883 174 2e-41 seq610 114 2e-23 >seq8142 Length=574 Score = 295 bits (326), Expect = 1e-77 Identities = 179/187 (96%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 70 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGACCT 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 254 GACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCT 313 Query 130 GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 314 GTCGGCCAAGGT-ATAAACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 372 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTC 248 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || Sbjct 373 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTC 432 Query 249 CCTCGAA 255 |||| || Sbjct 433 CCTCTAA 439 >seq18883 Length=68425 Score = 174 bits (192), Expect = 2e-41 Identities = 103/105 (98%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 103 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 46 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 105 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 45 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATG 1 >seq610 Length=1798 Score = 114 bits (126), Expect = 2e-23 Identities = 70/72 (97%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1729 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA-TTC 1786 Query 61 CTCGTTGAAGAC 72 |||||||||||| Sbjct 1787 CTCGTTGAAGAC 1798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751790374125