Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq610 230 1e-57 seq24305 149 3e-33 seq2940 149 3e-33 seq18513 136 2e-29 seq24540 123 1e-25 seq11896 109 2e-21 >seq610 Length=1798 Score = 230 bits (254), Expect = 1e-57 Identities = 224/283 (79%), Gaps = 9/283 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 316 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 257 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || || || ||| ||||||||| |||| Sbjct 256 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 200 Query 523 CGATCCTGATGTCTTCGGAT--GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||| | |||| |||| || || || |||| |||||| |||| ||||||||||||| Sbjct 199 CGACCTTGAT--CTTCAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 142 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 141 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 82 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 81 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 39 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 702 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 643 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 642 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 583 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 582 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 538 >seq24305 Length=483 Score = 149 bits (164), Expect = 3e-33 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || ||||||| ||||||| |||||||||| | || ||| |||||||| | || || | Sbjct 61 TCTACGAGTCAGGTTGTTTAGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGTC 120 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 121 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 180 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 181 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 225 >seq2940 Length=5055 Score = 149 bits (164), Expect = 3e-33 Identities = 203/279 (73%), Gaps = 16/279 (6%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTT-GGGT--GTCAA 464 ||||||||| |||||||| |||||||||| |||| |||| |||| || || Sbjct 303 CCCGTCTTGAAACACGGAACAAGGAGTCTGACAT--------GTGTAACGGGTAAGT-AA 253 Query 465 ACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACC 523 || || | || || ||| ||| || || || ||| ||||||||| ||||| Sbjct 252 ACTTGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGACC 196 Query 524 GATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 || | |||| | || || || |||| |||||| | ||| |||| || ||| | Sbjct 195 GACCTTGATATTCAGAGAAGGGTTCGAGTGTGAGCATGGATGTCAAAACCCAAAGGATAG 136 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| | | Sbjct 135 TGAACTATGCCTGACTAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGTTAC 76 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 || ||||||||| | || | | ||||||| | ||||| Sbjct 75 TGACGTGCAAATTGTTCATGTGACTTGGGTACAAGGGCG 37 Score = 127 bits (140), Expect = 9e-27 Identities = 127/165 (77%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || || |||| |||||||||||| |||| | || |||||||||||| | || || || Sbjct 691 TCTACAAGTCAGATTGTTTGGGAATTCAGCCCCAATCGGGAGGTAAATTCCGTCCAAGGC 632 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| | ||||||||||| ||||||| | || |||||||||||| || Sbjct 631 TAAATATGGGCGAAAGACCGATAGCAAACAAGTACCGCGAGGTAAAGATGAAAAGGCATT 572 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | ||||||||| ||| || ||||| ||| ||| ||||||||| Sbjct 571 TAAAAAGAGAGTCAAAGAGTGCGTGATATTATTGGGAGGGAAGCG 527 >seq18513 Length=490 Score = 136 bits (150), Expect = 2e-29 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||||||||||||||||||||||||||||||| ||| |||| ||| Sbjct 252 AGAGCGTACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGGCCAGGACGAAGTCAGG 311 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||| ||| |||||| || |||| ||||| ||||||||||| ||||| | |||||| Sbjct 312 GGAAACCCTGATGGAGGTCCGTAGCGATTCTGACGTGCAAATCGTTCGTCTGACTTGGGT 371 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 372 ATAGGGGCGA 381 >seq24540 Length=613 Score = 123 bits (136), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| || ||||| ||| |||| |||||| | | ||||| ||||||| Sbjct 157 GAGTCGGTTTGCTTGAGAGTGCAGACTTAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 216 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || | ||| |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 217 AT-GACCACGAGACCGATAGCACACAAGTACCGTGAGGGAAAGGTGAAAAGAACTTTGAA 275 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTG 185 |||||||| || || |||||||| || Sbjct 276 GAGAGAGTTCAAGAGTACGTGAAACTG 302 >seq11896 Length=457 Score = 109 bits (120), Expect = 2e-21 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||| | | |||| ||| ||||||| | || | ||||||| Sbjct 454 GAGTCGGGTTGTTTGGGAATGGATCCCTAATCGGGCGGTAAATGCCGTCCATGGCTAAAT 395 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || ||| ||||| ||||| || |||||| | |||||||| ||| ||||| || Sbjct 394 ATGGGCGAGAGATCGATAACGAACAAGTGCCACCAGGTAAAGATGATAAGGACTTTCAAA 335 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||| ||| || | ||||||||| | |||| |||| Sbjct 334 AGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGGAGCG 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079382776250