Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq2940 80.6 3e-13 seq1011 80.6 3e-13 seq22335 77.0 4e-12 >seq2940 Length=5055 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 4740 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 4798 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 4799 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 4836 >seq1011 Length=620 Score = 80.6 bits (88), Expect = 3e-13 Identities = 102/133 (77%), Gaps = 8/133 (6%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | |||| ||| Sbjct 212 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACTAGCATTCAGGCA 154 Query 70 -TA---AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC- 124 || ||||||||| | ||||||||||| |||| |||||||| | || || || | Sbjct 153 ATATCCAGCCTGCTTGAAGCACTCTAATTTGTTCAAAGTAAAAGTGCCGG-CCCACCTCG 95 Query 125 ACAC-CAATGAAG 136 |||| |||||||| Sbjct 94 ACACTCAATGAAG 82 >seq22335 Length=557 Score = 77.0 bits (84), Expect = 4e-12 Identities = 82/105 (78%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGC- 68 ||||||||||||| | || | ||| | || ||||||||||||||||| ||||| || Sbjct 123 AAACCAACAAAATTGTCAC--AAGTCTTCTTATATTATTCCATGCTAATACATTCGAGCA 180 Query 69 -GTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTC 111 ||| ||||||||||||| || | ||| |||||||||| ||| Sbjct 181 ATTAATGCCTGCTTTGAACGCTTTGATTAAATCAAGGTAAATGTC 225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595034083350