Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq22419 167 4e-39 seq8694 122 1e-25 seq7925 93.3 7e-17 >seq22419 Length=5635 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 2151 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 2092 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | ||||||| Sbjct 2091 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 2032 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 2031 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 1972 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 1971 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 1912 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 1911 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 1867 >seq8694 Length=35224 Score = 122 bits (134), Expect = 1e-25 Identities = 200/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 21805 CCCATGCTTTCGCACCCCAGCGTCGGTAGAGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 21864 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| |||||||| || |||||| |||||| | ||||| ||| Sbjct 21865 TCCTTCGTAGATCTGTAGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 21924 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| | ||||| || ||| || | ||| | |||||| | Sbjct 21925 TCAAGTTCATTGGTTTCGAAAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 21979 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| || | | | |||| | ||| |||||| || Sbjct 21980 ACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCC 22039 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 22040 CCGTTTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 22087 >seq7925 Length=601 Score = 93.3 bits (102), Expect = 7e-17 Identities = 169/245 (69%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||| | |||||||| | Sbjct 383 GCTTTCGTCTCTCAGTGTCAGTGTCGG-CCAGCAGAGTGCTTTCGACGTTGGTGTTCTTT 325 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | ||||||| Sbjct 324 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 265 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 264 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 205 Query 186 TCCCGCC--TACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTAT 243 || || ||||||| ||||| |||||| |||||||||||||||| ||| ||| Sbjct 204 AGCCACCTATACACGCTTTTTACGCCCAATCTTTCCGGATAACGCTTGCATCCTCTATAT 145 Query 244 TACCG 248 || || Sbjct 144 TATCG 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828568965525