Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq22419 277 4e-72 seq8694 210 5e-52 seq7925 201 3e-49 >seq22419 Length=5635 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 1871 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 1930 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 1931 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 1990 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 1991 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 2050 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 2051 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 2110 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||| |||||| ||||| Sbjct 2111 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGTAGCAAATGGGATT 2170 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 2171 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 2229 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 2230 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 2274 >seq8694 Length=35224 Score = 210 bits (232), Expect = 5e-52 Identities = 252/338 (75%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 22091 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 22032 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| ||| | || | ||| Sbjct 22031 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 21972 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | | || | ||| |||||| ||||| | || ||||| || Sbjct 21971 AAAGTC---GCCAAAAAGTGGCGGAATGCTTTCGAAACCAATGAACTTGAGTGAGACAGA 21915 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||| | ||| || |||||||| |||| | | |||||| ||| | Sbjct 21914 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAAAAG 21855 Query 241 CGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||||| ||| |||| || || | ||| ||| || ||||||| |||||||| ||| Sbjct 21854 CGAAGGCAGCTCTCTGGGTCTCTACC-GACGCTGGGGTGCGAAAGCATGGGGAGCGAACG 21796 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||| |||||||||||||| Sbjct 21795 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 21758 >seq7925 Length=601 Score = 201 bits (222), Expect = 3e-49 Identities = 269/369 (73%), Gaps = 5/369 (1%) Strand=Plus/Plus Query 43 CGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAA--GGGTGCGTAGG 100 || ||||| ||| || |||||||||||||| | |||||||||| | ||| |||| Sbjct 140 CGATAATATAGAGGATGCAAGCGTTATCCGGAAAGATTGGGCGTAAAAAGCGTGTATAGG 199 Query 101 TGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTG 160 ||| || ||||||| | || ||| | | |||||||||| || || | |||||| Sbjct 200 TGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTA 259 Query 161 CAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGAT 220 | ||| |||| | | ||||||| |||||| | ||| |||||||||||||||||| Sbjct 260 CCAAGCTTGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAG 319 Query 221 ATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCG 280 || | | |||||||| | |||| || |||||| | | |||||||||||| || Sbjct 320 ATCGGAAAGAACACCAACGTCGAAAGCACTCTGCTGGCC-GACACTGACACTGAGAGACG 378 Query 281 AAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATA 340 ||||| ||| |||||| ||||||||||||| ||||||| ||||||||||||| ||| Sbjct 379 AAAGCTAGGGTAGCAAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATA 438 Query 341 CTAGGTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACC 399 ||||| | | ||| || | | | ||| ||| |||||| ||||||| || || Sbjct 439 CTAGGCG-CTATGCGTATCGACCCGTGCAGTGTTATAGCTAACGCATTAAGTATCCCGCC 497 Query 400 TGGGGAGTA 408 ||||||||| Sbjct 498 TGGGGAGTA 506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202853779200