Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq22419 132 9e-29 seq5 93.3 8e-17 seq8694 86.0 1e-14 seq8025 78.8 2e-12 >seq22419 Length=5635 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 5278 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 5337 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 5338 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 5389 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 5390 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 5447 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 5448 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 5507 Query 249 CCT 251 ||| Sbjct 5508 CCT 5510 >seq5 Length=4504 Score = 93.3 bits (102), Expect = 8e-17 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 ||||||||||||||||| |||||| ||||||||||| ||| | ||||||| ||||| Sbjct 6 GGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAG 65 Query 228 TGGCGAGCGAAATGGGATGAGCCT 251 |||||||||||||||| ||||| Sbjct 66 CGGCGAGCGAAATGGGAGCAGCCT 89 >seq8694 Length=35224 Score = 86.0 bits (94), Expect = 1e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||||||||||| |||||| |||||||||||||| || ||||| Sbjct 11796 GCGAACTGAAACATCTAAGTAGCTAAAGGAAAGGAAATCAACCGAGACCCCGTTAGTAGC 11855 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 11856 GGCGAGCGAGAGCGGAT 11872 >seq8025 Length=15020 Score = 78.8 bits (86), Expect = 2e-12 Identities = 66/79 (84%), Gaps = 4/79 (5%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCA--AAGTA 226 |||||||||||||||||||||||| ||| || |||||||||||||| |||| |||| Sbjct 2437 GCGAACTGAAACATCTAAGTAGCTAAAGGTAAGGAAATCAACCGAGA--CCCAGTTAGTA 2380 Query 227 GTGGCGAGCGAAATGGGAT 245 | ||||||||| | |||| Sbjct 2379 GCGGCGAGCGAGAGCGGAT 2361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918135730400