Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2995 329 1e-87 seq27885 298 2e-78 seq819 219 1e-54 seq8644 154 5e-35 seq8694 78.8 3e-12 >seq2995 Length=728 Score = 329 bits (364), Expect = 1e-87 Identities = 228/257 (89%), Gaps = 1/257 (0%) Strand=Plus/Minus Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA-CGGCTCCCAC 243 || ||||||||| |||| ||| |||||||||||||| || | || | ||||||| Sbjct 257 GAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCAACGTCGGTGCAAGCACCTCCCAC 198 Query 244 TTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTC 303 |||| |||| ||||||| ||| || |||| || ||||||||||||||||||||||| Sbjct 197 TTATGCTACGCCTCTCATGTCGTTATACAATATCAAGCTAGAGTCAAGCTCAACAGGGTC 138 Query 304 TTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAG 363 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 137 TTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAG 78 Query 364 ATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 423 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 ACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGC 18 Query 424 ATTTGGCTACCTTAAGA 440 ||||||||||||||||| Sbjct 17 ATTTGGCTACCTTAAGA 1 Score = 140 bits (154), Expect = 1e-30 Identities = 97/110 (88%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 549 CTTTTGTTCCACACGAGATTTCTGTTCTCGCTGAGCTCATCTTAGGACACCTGCGTTATC 490 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 489 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCGCCTGACAATGTCCTC 440 >seq27885 Length=1172 Score = 298 bits (330), Expect = 2e-78 Identities = 168/170 (99%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 60 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 120 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 121 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTTAGCATC 170 >seq819 Length=766 Score = 219 bits (242), Expect = 1e-54 Identities = 124/126 (98%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 707 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTT 647 Query 530 AACATC 535 | |||| Sbjct 646 AGCATC 641 >seq8644 Length=1214 Score = 154 bits (170), Expect = 5e-35 Identities = 104/116 (90%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAA 233 |||| |||| || ||||||||| |||| ||| ||||||||||||||||||||||||| Sbjct 1102 TCCGATTCACGGAGTAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTGCGCCGAA- 1160 Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 289 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1161 --GCTCCCACTTATACTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCA 1214 >seq8694 Length=35224 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 13928 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 13869 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 13868 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 13823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634729471200