Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5 197 5e-48 seq8694 187 8e-45 >seq5 Length=4504 Score = 197 bits (218), Expect = 5e-48 Identities = 393/570 (69%), Gaps = 23/570 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 2219 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 2160 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 2159 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 2101 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 2100 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 2041 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 2040 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAG-GAGGCCT--T 1984 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | |||| Sbjct 1983 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAAGCCC--AAAGCCAATCCCAGGGAACAGTG 1926 Query 293 AAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||| | | |||||||| |||| | || | | ||||||| || | | | Sbjct 1925 AAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTA 1866 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||||| |||||| Sbjct 1865 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 1807 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 1806 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 1747 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 1746 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 1693 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 1692 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 1663 >seq8694 Length=35224 Score = 187 bits (206), Expect = 8e-45 Identities = 236/325 (73%), Gaps = 17/325 (5%) Strand=Plus/Minus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||||||||| | Sbjct 14061 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCA 14002 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||| | Sbjct 14001 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTG 13942 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 13941 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 13882 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 13881 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 13822 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 ||| || | | | ||| | |||| || || ||||||||||| Sbjct 13821 CATTCAAAGCTT---ATAACACTT-------------CTCCTTTTGACTTTCCAGCACCG 13778 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||| ||||| | ||||| ||| Sbjct 13777 GGCAGGTGTCAGACTCTATACATCG 13753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701910134400