Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq28558 98.7 2e-18 seq12108 91.5 2e-16 seq11802 78.8 2e-12 >seq28558 Length=420 Score = 98.7 bits (108), Expect = 2e-18 Identities = 94/118 (80%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 6 AGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGC 65 |||||||||| || ||| | | ||||||| | ||| || ||| || ||||| ||| Sbjct 420 AGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGC 363 Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 ||||||||| | ||||||||||| |||||||||||||||||||||||| || |||| Sbjct 362 GAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAA 305 >seq12108 Length=951 Score = 91.5 bits (100), Expect = 2e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 29 AATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTAT 88 ||||||| | ||| || ||| || ||||| |||||||||||| | |||||||||| Sbjct 837 AATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTAT 896 Query 89 GGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 | |||||||||||||||||||||||| || |||| Sbjct 897 GACTGAACGCCTCTAAGTCAGAATCCGGGCTAGAA 931 >seq11802 Length=4490 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 63 CGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGA 122 |||||||||||| | ||||||||||| |||||||||||||||||||||||| || ||| Sbjct 4428 CGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTAGA 4487 Query 123 A 123 | Sbjct 4488 A 4488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818971641600