Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq4524 508 2e-141 seq25600 343 4e-92 seq25990 237 5e-60 seq15206 116 1e-23 seq19633 91.5 4e-16 >seq4524 Length=592 Score = 508 bits (562), Expect = 2e-141 Identities = 414/494 (84%), Gaps = 19/494 (4%) Strand=Plus/Plus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 ||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 19 AGCCCGGTATTGTTATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCG 78 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 79 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 138 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 209 |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 139 TAATTCTCCGTCACCCGTTACCACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATA 198 Query 210 GGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGAT--TCGTTAAGTTAT 266 |||||||||||||||||| | ||||| || | ||||||||||||| | ||||||| Sbjct 199 GGGCAGAAATTTGAATGATGCGTCGCCAGCACAAAGGCCATGCGATCAGCCCAAAGTTAT 258 Query 267 TATGAATCACC-AAGGAGCC-----CCGAA--GGGCGTTGGTTTTTTATCTAATAAATAC 318 | || ||||| ||| || | ||||| || | | |||| |||||||||| | Sbjct 259 TCAGAGTCACCAAAGTAGACGATGGCCGAAACCACCGATTGGTTTTGATCTAATAAAAGC 318 Query 319 ACCCCTTCCG----AAGTCGGG--GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGT 372 |||||||| |||||| | || |||||||||||||| || ||| || | || Sbjct 319 GTCCCTTCCGTCTCCGGTCGGGACTCTGTTGGCATGTATTAGCTCCAGTATTTCCGCAGT 378 Query 373 TATCCATGT-AGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAG 431 ||||||||| | | | |||| ||| | | ||| ||||||||||||||||||||||||||| Sbjct 379 TATCCATGTAACTGAAGTACGATCTATTGAACTATAACTGATTTAATGAGCCATTCGCAG 438 Query 432 TTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCAT 490 |||||| || | ||| | | ||||||| ||||||||||||||||||||||||||||||| Sbjct 439 TTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCAT 498 Query 491 ATGACTACTGGCAG 504 |||||||||||||| Sbjct 499 ATGACTACTGGCAG 512 >seq25600 Length=3466 Score = 343 bits (380), Expect = 4e-92 Identities = 213/227 (94%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||||| Sbjct 2346 GTACTCATTCCAATTACCAGACTCGAAAGAGCCCGGTATTGTTATTTATTGTCACTACCT 2287 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2286 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2227 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||| ||||||||||||||| |||| ||||||| ||||||||| Sbjct 2226 TCTCAGGCTCCCTCTCCGG-ATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTA 2168 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 227 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2167 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGA 2121 >seq25990 Length=42251 Score = 237 bits (262), Expect = 5e-60 Identities = 252/327 (77%), Gaps = 29/327 (9%) Strand=Plus/Plus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTT--------GATAGGGCAGAAA---TT 220 |||||| ||||||||||||| ||||| ||| || |||||| || ||| || Sbjct 41293 ACCATGATAGGCCACTATCCCACCATTAAAAATTTAAAAATTGATAGGACAAAAAAAATT 41352 Query 221 TGAATGAACCATCGCCGGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAA 279 ||||||| | ||||| || ||| ||||||||||| ||| |||||| |||||||| || Sbjct 41353 TGAATGATGCGTCGCCAGCACAAAGGCCATGCGATCCGTCGAGTTATCATGAATCATCA- 41411 Query 280 GGAGCCCCGA----AGG--GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGT 332 |||| || || |||| | ||||||||||||||| || ||| ||||| Sbjct 41412 -GAGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATTTTTTCTAGAAGT 41470 Query 333 CGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT 392 |||||||| | ||| ||||||||||||||||||| |||||||||| ||||| || ||| Sbjct 41471 CGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGT-AGTTACC 41529 Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 |||||| |||| |||||||||||||||||||||||||||||||| | | | | | Sbjct 41530 ATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCAAT-------TCGTTCA 41582 Query 453 TACTTAGACATGCATGGCTTAATCTTT 479 |||||| |||||||||||||||||||| Sbjct 41583 TACTTACACATGCATGGCTTAATCTTT 41609 >seq15206 Length=4470 Score = 116 bits (128), Expect = 1e-23 Identities = 86/98 (88%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||||||||||| Sbjct 97 TTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAG 38 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAA 398 |||||| |||||||||| ||||| || ||| |||||| Sbjct 37 AATTACTACGGTTATCCGAGTAGT-AGTTACCATCAAA 1 >seq19633 Length=804 Score = 91.5 bits (100), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACAT 463 ||||||||||||||||||||||||||||||||| || | ||| | | ||||||| |||| Sbjct 2 ATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACAT 61 Query 464 GCATGGCTTAAT 475 |||||||||||| Sbjct 62 GCATGGCTTAAT 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509965382400