Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18099 178 1e-39 >seq18099 Length=159039 Score = 178 bits (196), Expect = 1e-39 Identities = 551/843 (65%), Gaps = 20/843 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | || || |||||| | || ||||| Sbjct 20111 ATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTCGATCTCTCACAAGAC 20170 Query 61156 ATGAATGACTGGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | ||||||||| | | | ||| ||| |||| || ||||| ||||| || | || Sbjct 20171 AACCGTGACTGGGAAAATCTCAACGA-CGGAGAACGTCACTTCATCAAACACGTACTCGC 20229 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| ||||| || ||||| ||||| || || | ||| ||| | || Sbjct 20230 TTTCTTCGCCGCATCTGACGGAATCGTACTCGAAAACCTCGCTTCACGATTCATGTCAGA 20289 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| || || |||||| |||||||| ||||| || || || |||||| |||| Sbjct 20290 TGTACAAGTCTCCGAAGCGCGTGCATTCTACGGATTCCAAATCGCTATTGAGAATATCCA 20349 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || |||||||| | |||| |||| || ||||||| || ||| | || | Sbjct 20350 TTCAGAGATGTATTCTCTTCTTCTCGACACATACATCAAAGATAACAAAGAAAGAGATCA 20409 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 || ||| ||| ||||| ||||| || || | |||||| | ||||| | | Sbjct 20410 TTTATTCCGTGCAATCGAAACGATTCCTTGTGTTACCAAGAAAGCTCAATGGGCTATGAC 20469 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| | | | | ||||| | |||||| | | || || || || || Sbjct 20470 TTGGAT---CGATGGATCTCAAACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGA 20526 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| |||| ||| ||| || || | || || ||| | |||||||||||||| || Sbjct 20527 AGGTATATTCTTCTCTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCAT 20586 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| ||| | || ||| || ||||| || ||| | ||||| || | || |||||||| Sbjct 20587 GCCTGGTTTAACTTTCTCTAACGAGTTAATCTCAAGAGACGAAGGTCTTCACTGTGATTT 20646 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGT--GAATCGTCCGTCGGAGGAGCGTGTGGGT 61692 ||| |||| ||| | || || | || ||| | | || ||||| | ||| Sbjct 20647 CGCTTGTTTG--ATTTATACTCTGTTACGTACGAAGC-TTAGT--GAGGAAAGAGTGAAG 20701 Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752 |||||| |||| ||||| || || || ||| | |||||| | || Sbjct 20702 TCGATTGTGTGTGATGCGGTTGAGATTGAGAGAGAGTTTGTATGTGACGCGCTTCCTTGT 20761 Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812 | | | || |||||| ||| | | ||| ||||||||||| |||||||| || | Sbjct 20762 GCGTTGGTTGGGATGAATCGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGG 20821 Query 61813 CTGTT-GGTCGATTTGGGTATG---AAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 |||| ||| ||||||||| ||| | ||| | || || || ||||||| Sbjct 20822 TTGTTAGGTGCGCTTGGGTATGGTAAAG----TGTATGGTGTGAGTAATCCGTTTGATTG 20877 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| |||| | | || ||||| |||||||| ||||| | || || || || Sbjct 20878 GATGGAGTTGATAAGTTTACAAGGGAAGACTAATTTTTTTGAGAAGAGAGTTGGTGATTA 20937 Query 61929 TCA 61931 ||| Sbjct 20938 TCA 20940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397428574766000