Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04]
28,775 sequences; 199,120,032 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq18099 178 1e-39
>seq18099
Length=159039
Score = 178 bits (196), Expect = 1e-39
Identities = 551/843 (65%), Gaps = 20/843 (2%)
Strand=Plus/Plus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
|||||||| || || ||||| ||||||||||| | || || |||||| | || |||||
Sbjct 20111 ATGTACAAGAAAGCCGAAGCATCCTTCTGGACCGCCGAAGAAGTCGATCTCTCACAAGAC 20170
Query 61156 ATGAATGACTGGGAGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214
| ||||||||| | | | ||| ||| |||| || ||||| ||||| || | ||
Sbjct 20171 AACCGTGACTGGGAAAATCTCAACGA-CGGAGAACGTCACTTCATCAAACACGTACTCGC 20229
Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274
||||| ||||| || ||||| ||||| || || | ||| ||| | ||
Sbjct 20230 TTTCTTCGCCGCATCTGACGGAATCGTACTCGAAAACCTCGCTTCACGATTCATGTCAGA 20289
Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334
|| ||||| || || |||||| |||||||| ||||| || || || |||||| ||||
Sbjct 20290 TGTACAAGTCTCCGAAGCGCGTGCATTCTACGGATTCCAAATCGCTATTGAGAATATCCA 20349
Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394
|| |||||||| | |||| |||| || ||||||| || ||| | || |
Sbjct 20350 TTCAGAGATGTATTCTCTTCTTCTCGACACATACATCAAAGATAACAAAGAAAGAGATCA 20409
Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454
|| ||| ||| ||||| ||||| || || | |||||| | ||||| | |
Sbjct 20410 TTTATTCCGTGCAATCGAAACGATTCCTTGTGTTACCAAGAAAGCTCAATGGGCTATGAC 20469
Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514
|||||| | | | | ||||| | |||||| | | || || || || ||
Sbjct 20470 TTGGAT---CGATGGATCTCAAACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGA 20526
Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574
||| |||| ||| ||| || || | || || ||| | |||||||||||||| ||
Sbjct 20527 AGGTATATTCTTCTCTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCAT 20586
Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634
||| ||| | || ||| || ||||| || ||| | ||||| || | || ||||||||
Sbjct 20587 GCCTGGTTTAACTTTCTCTAACGAGTTAATCTCAAGAGACGAAGGTCTTCACTGTGATTT 20646
Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGT--GAATCGTCCGTCGGAGGAGCGTGTGGGT 61692
||| |||| ||| | || || | || ||| | | || ||||| | |||
Sbjct 20647 CGCTTGTTTG--ATTTATACTCTGTTACGTACGAAGC-TTAGT--GAGGAAAGAGTGAAG 20701
Query 61693 GAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTC 61752
|||||| |||| ||||| || || || ||| | |||||| | ||
Sbjct 20702 TCGATTGTGTGTGATGCGGTTGAGATTGAGAGAGAGTTTGTATGTGACGCGCTTCCTTGT 20761
Query 61753 TCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGT 61812
| | | || |||||| ||| | | ||| ||||||||||| |||||||| || |
Sbjct 20762 GCGTTGGTTGGGATGAATCGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGG 20821
Query 61813 CTGTT-GGTCGATTTGGGTATG---AAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868
|||| ||| ||||||||| ||| | ||| | || || || |||||||
Sbjct 20822 TTGTTAGGTGCGCTTGGGTATGGTAAAG----TGTATGGTGTGAGTAATCCGTTTGATTG 20877
Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928
||||| |||| | | || ||||| |||||||| ||||| | || || || ||
Sbjct 20878 GATGGAGTTGATAAGTTTACAAGGGAAGACTAATTTTTTTGAGAAGAGAGTTGGTGATTA 20937
Query 61929 TCA 61931
|||
Sbjct 20938 TCA 20940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397428574766000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |