Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20montbretiana_20[genbank_20GCA_5F001484125.1_202016-01-04] 28,775 sequences; 199,120,032 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq11714 619 1e-172 seq6667 547 7e-151 seq7508 104 3e-17 seq4916 100 3e-16 >seq11714 Length=14353 Score = 619 bits (686), Expect = 1e-172 Identities = 708/951 (74%), Gaps = 0/951 (0%) Strand=Plus/Minus Query 159845 GGTTGGTTCGGCGTCCTGATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTC 159904 || ||||| || || |||||||||| || | ||| | |||||| | || || || Sbjct 1387 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 1328 Query 159905 GCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCA 159964 || ||||| |||||||| || || || || ||||| || |||||||| || |||| || Sbjct 1327 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 1268 Query 159965 CTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGT 160024 || | ||||| ||||| || || || ||||| || |||| |||| || |||||| Sbjct 1267 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 1208 Query 160025 CTTCACTTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGT 160084 | || || || || || |||||||| ||||| | || || ||||| || ||||| ||| Sbjct 1207 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 1148 Query 160085 CCTTTCCAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAG 160144 |||| |||| | || | ||||| | | || | | ||||||||||||||| Sbjct 1147 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 1088 Query 160145 TGGGAACTCTCTTACCGTCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCA 160204 |||||||| || |||||| ||||||||||| ||||| ||||||||| || ||||| Sbjct 1087 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 1028 Query 160205 GTCGCTGCTGCTTCTGCTGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGAT 160264 || || ||||| ||||||| ||| | ||||||| | ||||| || ||| || ||| Sbjct 1027 GTTGCAGCTGCAACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGAT 968 Query 160265 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACAC 160324 | ||||||||| || |||||||||||||| |||| |||| |||||||||| || || ||| Sbjct 967 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 908 Query 160325 AATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTG 160384 || || |||||||| || || |||||| | || || || || |||||||| || || || Sbjct 907 AACATTCTTATGCACCCATTTCACATGTTAGGCGTAGCGGGTGTATTCGGCGGCTCCCTA 848 Query 160385 TTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACT 160444 || |||||||||||| || |||| ||||||||| | |||| || || ||||||| | Sbjct 847 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 788 Query 160445 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCA 160504 || || || | ||||||| ||||| ||||| ||||| ||||| ||||| || || Sbjct 787 GAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTATAACATTGTAGCT 728 Query 160505 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT 160564 || ||||| || || || || |||||||| |||||||| || ||||| || || ||| Sbjct 727 GCTCATGGTTATTTTGGCCGATTGATCTTTCAATATGCTAGTTTCAACAATTCTCGTTCT 668 Query 160565 CTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTT 160624 | || |||||| | || |||||||| || || || || ||||| ||||| | ||| || Sbjct 667 TTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATT 608 Query 160625 TCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAA 160684 |||||||| ||||| || ||||||||||| |||||||| || | | || | ||| Sbjct 607 AGCACCATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAA 548 Query 160685 GGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTC 160744 |||| ||| | || |||||||| || | ||||||| ||| || || |||||||| Sbjct 547 GGACGCGTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTT 488 Query 160745 ATGCACGAGCGTAACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG 160795 ||||| || ||||| ||||||||||||||||| ||||| ||||||| |||| Sbjct 487 ATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 437 >seq6667 Length=26159 Score = 547 bits (606), Expect = 7e-151 Identities = 721/993 (73%), Gaps = 5/993 (1%) Strand=Plus/Minus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || || || |||||||| || |||||||| || | || ||||| ||| ||| ||||| Sbjct 10094 GACCGCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCT 10035 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| | || || || || || | || |||||||| |||||| | ||| Sbjct 10034 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGCT 9975 Query 161665 AGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCT 161724 ||||||||| | || ||| |||||| | || || || ||| ||||| ||| | | Sbjct 9974 AGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCCGTTTCGACTCCTGCTAATAGT 9915 Query 161725 ATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 161783 | | |||||| || || || || ||||||||||| || ||||| ||||| | || Sbjct 9914 TTAGCACATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 9856 Query 161784 GATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGG 161843 | ||| | || || || ||| |||||| || |||||||| |||||||| | || || Sbjct 9855 GTGTCAATTAGGCGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGG 9796 Query 161844 ATTCATGCTTCGTCAGTTTGAACTTGCTCG-TCTTATCGGTATCCGTCCTTACAATGCTA 161902 || ||| | ||||| |||||||||||||| || || | | || ||||| ||||| | Sbjct 9795 TTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGGCCTTATAATGCAA 9737 Query 161903 TTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGAC 161962 | || ||||||||||| |||||||||||||| ||||| || || ||||| || || | Sbjct 9736 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTC 9677 Query 161963 AGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTT 162022 | || |||||||| ||||| ||||| || || ||||| || | ||| | || | Sbjct 9676 AATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTCT 9617 Query 162023 TCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTA 162082 | | ||||| || || |||||||| | || || || || |||||||| ||||| ||| Sbjct 9616 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCCGGTG 9557 Query 162083 TCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACC 162142 | |||| | || |||| | |||||||| |||| ||||| ||||| || | | Sbjct 9556 TACTGGGCGCCGCCCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 9497 Query 162143 AAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTT 162202 |||||||||| |||||||| ||| |||||| || | || |||| || || |||| Sbjct 9496 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTT 9437 Query 162203 ACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATA 162262 | || ||||| || || |||||||| |||||||| ||||| || |||||||| |||| Sbjct 9436 ATTCAATGGTCACCGCTAACCGTTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATA 9377 Query 162263 AGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTA 162322 | |||||||| |||||||||||| | || || || || | ||| | |||| ||| || Sbjct 9376 AACGTTGGTTACATTTCTTTATGTTATTTGTACCGGTAACTGGTTTATGGATGAGTGCTC 9317 Query 162323 TCGGTATTATTGGACTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTC 162382 | || | | || || ||| | || || ||||| || ||||| || || ||||| || | Sbjct 9316 TTGGAGTAGTCGGCCTAGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCC 9257 Query 162383 GTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAG 162442 |||||||||| ||||| |||||||| || ||||| || || ||||| || || || |||| Sbjct 9256 GTGCAGCGGAAGATCCGGAATTTGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAG 9197 Query 162443 GTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGG 162502 || ||||||| ||| |||| | ||||| || ||||| ||| || |||||||||||| Sbjct 9196 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 9137 Query 162503 AAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 | ||||| || | || ||||| || | ||||| Sbjct 9136 AGGTTCTACCACGTGGAAACGCTCT-TTAATGG 9105 >seq7508 Length=48272 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 160969 TATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGT 161028 || ||||| ||||| ||||| ||||| || | ||| || ||||| || ||||||||| Sbjct 20841 TACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGACTTGCCTTACTCATGCCGTGCTGGT 20782 Query 161029 GCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCT 161088 ||||||||| || || ||||| | | ||| | || || || || || ||| Sbjct 20781 TCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGCTCCGTTGACCAGTCCGACCAAAGC 20722 Query 161089 TTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACT 161148 ||| |||| || || ||| | ||| ||| | |||||| || || || ||||| || ||| Sbjct 20721 TTCTTGGACGACGACCAAATGGAAGAAGGCTATGTCCTAACATGTGTCGCTTACCCAACT 20662 Query 161149 TCTGATGTAACTATT 161163 |||||||| || ||| Sbjct 20661 TCTGATGTCACCATT 20647 >seq4916 Length=5169 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 160960 GATGATCAATATGTCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGT 161019 ||||| ||||| || | || || ||||| || ||||| |||||| || ||||| || Sbjct 3525 GATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTTGC 3584 Query 161020 CGTGCTGGTGCTTGCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCT 161079 | |||||||| || || ||||| ||||||||||| |||| || | || || || ||| Sbjct 3585 AGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATCGAGAAAGGCAACGTTGACCAGTCT 3644 Query 161080 GATCAATCTTTCCTGGATGATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCT 161139 ||| || ||||| || || |||| |||| || | |||| |||| || || ||| Sbjct 3645 GATGGTTCGTTCCTTGAGGACCATCACTTTGAGAATGGTTATGTCTTGACTTGTGTGGCT 3704 Query 161140 TATCC 161144 || || Sbjct 3705 TACCC 3709 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551177676945000