Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq137846 509 3e-142 seq53167 233 3e-59 seq182048 181 2e-43 seq240523 170 3e-40 seq61283 127 4e-27 seq190269 73.4 7e-11 >seq137846 Length=517 Score = 509 bits (564), Expect = 3e-142 Identities = 302/314 (96%), Gaps = 1/314 (0%) Strand=Plus/Minus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGA 64 ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| Sbjct 452 TGGTCCGGCCGGGCCTTTCCTCCTGGGGAGCCGCATGCCCTTCACTGGGTGTGTCGGGGA 393 Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 392 ACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATACAT 333 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 332 TAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 273 Query 185 AATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 244 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 272 AATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGG 213 Query 245 ATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGA 304 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 212 ATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GA 154 Query 305 ACGAAAGTTAGGGG 318 |||||||||||||| Sbjct 153 ACGAAAGTTAGGGG 140 >seq53167 Length=7246 Score = 233 bits (258), Expect = 3e-59 Identities = 203/248 (82%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 2329 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 2388 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | |||||| | || | ||||| |||||| | ||| || |||||||| Sbjct 2389 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 2447 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 2448 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 2507 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 2508 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 2566 Query 311 GTTAGGGG 318 ||| |||| Sbjct 2567 GTTGGGGG 2574 >seq182048 Length=368 Score = 181 bits (200), Expect = 2e-43 Identities = 213/284 (75%), Gaps = 7/284 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTC 99 ||| ||||| || |||| || | ||| | |||||||||||||| ||||||||||| | Sbjct 283 TGCTCTTCATTGAGTGTCGAGGTGGGCCGGCACTTTTACTTTGAACAAATTAGAGTGCTT 224 Query 100 AAAGCAGGCCT----TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGT 155 |||||||| |||| |||| | |||||||||||| ||||||||| | |||| Sbjct 223 CAAGCAGGCTGGATATTGCCTGAATGCTAGTGCATGGAATAATGGAATAGGACCT-CGGT 165 Query 156 TCTATTTTGTTGGTTTCTAGGACC-GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 |||||||||||||||| || ||| | |||||||||||| | || || |||||| | Sbjct 164 TCTATTTTGTTGGTTTTCAGAACCAGAGGTAATGATTAATGGAGACAGGCGGGGGCATTC 105 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| || ||||||||||||||||||| ||||| || |||||||| Sbjct 104 GTATTGCGACGTTAGAGGTGAAATTCTTGGATCGTCGCAAGACGGACCGAAGCGAAAGCA 45 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||| || || |||| ||||||||||||| || Sbjct 44 TTTGCCAAGGATGTTCTCGTTGATCA-AGAACGAAAGTTAGAGG 2 >seq240523 Length=230 Score = 170 bits (188), Expect = 3e-40 Identities = 180/233 (77%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 81 TGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC----TCGAATACATTAGCATGGAATA 136 |||||||||||||||| ||||||| || |||| | |||||||| | |||||||||| Sbjct 230 TGAAAAAATTAGAGTGCTCAAAGC-GGTCTTTACACGATCGAATACTGTTGCATGGAATA 172 Query 137 ATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAG 196 || |||||||| | ||||||||||||||||| | | ||| ||||||||||| || Sbjct 171 ATGAAATAGGACTTT-GGTTCTATTTTGTTGGTCTTCGGAACCAAGGTAATGATTAAGAG 113 Query 197 GGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGA 256 ||| || |||||| | |||||| | |||||||||||||||||| |||| Sbjct 112 GGACAGACGGGGGCATTAGTATTGCGACGCTAGAGGTGAAATTCTTGGACCGTCGCAAGA 53 Query 257 CTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||||| |||||||| || ||||| |||| ||||||||||| ||||||| Sbjct 52 CTAACTAAAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA-AGAACGAA 1 >seq61283 Length=1961 Score = 127 bits (140), Expect = 4e-27 Identities = 179/247 (72%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATG 131 || ||| |||||||||| || |||| |||||||| || | || |||||||||||| Sbjct 983 CTGTTATTTTGAAAAAAGTAAAGTGGTCAAAGCAAATCTACGTTCTGATACATTAGCATA 1042 Query 132 GAATAATAG-AATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || || | |||| | | || |||| |||| || | ||| || |||||||| Sbjct 1043 AAACAACATCAATAT----TTCAATTTTATTGTGTTAGTCTTCGGGATCGGAGTAATGAT 1098 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| | ||| |||| || | | |||| || ||||||||||||||| |||||||||| Sbjct 1099 TAACATGGACAGTCAGGAGCATTCATATTTTATAGTCAGAGGTGAAATTTTTGGATTTAT 1158 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACC-AAGGATGTTTTCATTAATCAGTGAACGAA 309 ||||| | | | ||||||||| || || || |||| || ||||||| || ||||||| Sbjct 1159 GAAAGACGATCAATTGCGAAAGCATTTGCCAAAAGATGCTTCCATTAATGAG-GAACGAA 1217 Query 310 AGTTAGG 316 | || || Sbjct 1218 AATTGGG 1224 >seq190269 Length=230 Score = 73.4 bits (80), Expect = 7e-11 Identities = 98/127 (77%), Gaps = 7/127 (6%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT-TGC-TCGAATACAT 124 ||| | | |||||||||| ||| ||||||||| |||||||| || ||| | |||||| Sbjct 108 CAGAAATGTTACTTTGAATAAACTAGAGTGTTTCAAGCAGGCTTTATGCCTTGAATACTC 167 Query 125 TAGCATGGAATAAT-AGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 ||||||||||||| || | ||||| | |||||| | ||||||| ||| || || | Sbjct 168 CAGCATGGAATAATGAGTA-AGGAC-TTAGGTTCT-TCTTGTTGG-TTCAAGAGCCAGAG 223 Query 184 TAATGAT 190 ||||||| Sbjct 224 TAATGAT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912754329344