Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq15319 650 0.0 seq103731 246 1e-62 seq53167 228 3e-57 seq228475 223 1e-55 seq160490 138 5e-30 seq232853 129 2e-27 seq124860 105 3e-20 seq102600 75.2 5e-11 >seq15319 Length=694 Score = 650 bits (720), Expect = 0.0 Identities = 471/541 (87%), Gaps = 4/541 (1%) Strand=Plus/Plus Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAA 206 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1 AAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGCAC 60 Query 207 CCAGACTTGCCCGCAGTTGCTCAACCGGCCC-CTCGGCCGGTGCACTCTTCTGCGGTCAG 265 ||||||||| ||| | || ||| | || ||| || |||||||| | ||| ||| Sbjct 61 CCAGACTTGGGCGCTGCTGATCACCTTGCGTTCTCCGCGAGTGCACTCGACAGCGCACAG 120 Query 266 GCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGT 325 ||||||||| | ||||| || ||||||||||| |||| || || | |||||||| || Sbjct 121 GCCAGCATCGGTTCGGGTGGCTGGATAAAGGCCGTAGGAACGTAGCTCTCTTCGGGGAGT 180 Query 326 GTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGC--TCCGGCTAGGA 383 ||||||||| |||| |||| |||| | |||| |||| |||||| || |||||||| Sbjct 181 GTTATAGCCTACGGTGCCATGCAGCCCAGCCGGACCGAGGACCGCGCCTTCGGGCTAGGA 240 Query 384 TGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCT 443 |||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 241 TGCTGGCGTAATGGGTGTAAGCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATCT 300 Query 444 ATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCC 503 ||||||||||||||||| ||||||| | |||| |||||||||||||| ||||| |||||| Sbjct 301 ATGCGAGTGTTTGGGTGGCAAACCCATACGCGGAATGAAAGTGAACGTAGGTGAGAACCC 360 Query 504 GTGAGGGT-GCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 | ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 CTTTGGGGCGCATCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 420 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 480 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||||||||||||||||||||||| |||||||||||||||||||| || | || |||||| Sbjct 481 GGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAACATGCGCATGGGGGCG 540 Query 683 A 683 | Sbjct 541 A 541 >seq103731 Length=937 Score = 246 bits (272), Expect = 1e-62 Identities = 144/149 (97%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 22 GTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAA 81 |||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 789 GTGTAAAGCTCTTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGAGGTAAA 848 Query 82 TTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 141 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 TTTCATCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAG 908 Query 142 ATGAAAAGCACTTTGGAAAGAGAGTTAAA 170 ||||||||||||||||||||||||||||| Sbjct 909 ATGAAAAGCACTTTGGAAAGAGAGTTAAA 937 >seq53167 Length=7246 Score = 228 bits (252), Expect = 3e-57 Identities = 221/281 (79%), Gaps = 5/281 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||||| | Sbjct 4609 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGTGAGTA 4668 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGAC 522 ||||||| | || || ||| ||| || || || ||| ||||||||| |||| Sbjct 4669 AACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTGCACCGCCGAC 4725 Query 523 CGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATG 582 ||| | |||| | | || || || |||| |||||| |||| ||||||||||||||| Sbjct 4726 CGACCTTGATCTATAGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATG 4785 Query 583 GTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTT 642 ||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| | Sbjct 4786 GTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGATA 4845 Query 643 CTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 4846 CTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 4886 Score = 163 bits (180), Expect = 1e-37 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 4223 TCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 4282 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| |||||||||||||| ||||||| | || |||||||||||| |||| Sbjct 4283 TAAATATGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGTAAAGATGAAAAGGACTT 4342 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 4343 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 4387 >seq228475 Length=270 Score = 223 bits (246), Expect = 1e-55 Identities = 199/242 (82%), Gaps = 12/242 (5%) Strand=Plus/Minus Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 270 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGT 211 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGC 226 |||| |||||||||||||||| |||||||||| || || |||||||||| | | Sbjct 210 TAAACAGCACGTGAAATTGTTAAAAGGGAAGCACTCGCTACCAGACTTGGGTTTGGCGGT 151 Query 227 TCAACCGGCCCCTCG-GCCGGTGCACTCTTCTGC--GGTCAGGCCAGCATCAGC--TCGG 281 |||||||| || || |||| ||| ||| || | |||||||||||||||| || | Sbjct 150 TCAACCGGGGCCACGCCCCGGGGCA---TTCCGCCAGCTCAGGCCAGCATCAGCTTTCCG 94 Query 282 GCGGTCGGATAAAGGCCCCGGGAATGTGGC-CCCCTTCGGGGG-GTGTTATAGCCCGGGG 339 ||| || |||| | |||||||||||| |||| ||||||| |||||||||||||| | Sbjct 93 TCGG--GGGCAAAGACGTCGGGAATGTGGCTCCCCCTCGGGGGAGTGTTATAGCCCGGCG 36 Query 340 TG 341 || Sbjct 35 TG 34 >seq160490 Length=1974 Score = 138 bits (152), Expect = 5e-30 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| |||||||||||||||||||||||||| ||| ||||| ||| |||||| ||| Sbjct 534 GTTGGTACCCGAAAGATGGTGAACTATGCCTGGCCAGGATGAAGTCAGGGGAAACCCTGA 475 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 474 TGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCTGAGCTGGGTATAGGGGCGA 416 Score = 123 bits (136), Expect = 1e-25 Identities = 116/145 (80%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||| ||| || |||||| | || ||| |||||| | | ||||| |||||| Sbjct 1181 CGAGTCGGGTTGCTTGAGAGTGCAGCCCGAAGCGGGTGGTAAACTCCATCTAAGGCTAAA 1122 Query 99 TATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 || ||||| ||||||||||| | ||||||| |||| ||||| ||||||| |||||| Sbjct 1121 TAC-GGCCACGAGACCGATAGTGGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGA 1063 Query 158 AAAGAGAGTTAAAAAGCACGTGAAA 182 | |||||||| | ||| |||||||| Sbjct 1062 AGAGAGAGTTCATAAGAACGTGAAA 1038 >seq232853 Length=347 Score = 129 bits (142), Expect = 2e-27 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 568 GGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGG 627 |||||||||||||||||||| | ||||||| ||| |||||||||| |||||||||||| Sbjct 122 GGGACCCGAAAGATGGTGAATTTTGCCTGAGCGGGGCGAAGCCAGAGAAAACTCTGGTGG 63 Query 628 AGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || |||| |||| ||||||||||| | || || |||||||||| ||||| Sbjct 62 AGGCCCGAAGCGACTCTGACGTGCAAATCGTTTGTTTAACTTGGGTATAGCGGCGA 7 >seq124860 Length=269 Score = 105 bits (116), Expect = 3e-20 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| |||| ||| | |||||| ||||| ||| | |||| ||| || || |||||| Sbjct 197 GAGTCGGGTTGCTTGAAAGTGCAGC-CTAAAGCGGGTGATAAACTTCATCCAAGGCTAAA 139 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 |||||| | ||||||| ||||||| |||||| ||||| || |||| |||||| | Sbjct 138 TATTGGAGTAAATTCGATAGCAAACAAGTACAGTGATGGAAAGTTGCAAAGAACTTTGAA 79 Query 159 AAGAGAGTTAAAAAGCACGTGAAAT 183 |||||||| || || ||||||||| Sbjct 78 GAGAGAGTTCAAGAGAACGTGAAAT 54 >seq102600 Length=392 Score = 75.2 bits (82), Expect = 5e-11 Identities = 69/87 (79%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGG---TGT 461 || ||||||||| |||||||||||||||||||||||| | |||||| ||||| || Sbjct 172 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGCGCGAGTCATTGGGCTCTGC 231 Query 462 CAAACCCGTGCGCGTAATGAAAGTGAA 488 ||||| ||| |||||||||||| Sbjct 232 GAAACCTAAAGGCGAAATGAAAGTGAA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2074267959400