Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq172348 239 6e-61 seq248150 183 4e-44 seq57114 149 9e-34 seq89940 141 1e-31 >seq172348 Length=362 Score = 239 bits (264), Expect = 6e-61 Identities = 208/257 (81%), Gaps = 11/257 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 97 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGTCTTACAA-CTTCGCAC 155 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| || Sbjct 156 GGACCTGTGTTTTTAATAAACAGTCGCTTCTCTCTGGCCTCTGCGACCACCACCAGCACA 215 Query 121 ACACGTCG---------TTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCAT 171 ||| || |||||| | | ||| ||||||||||||||||||||||| || Sbjct 216 TCACAACGCTTGGTTGCTTCACCGGGA-TGGTCCCCCTTCTCCCGAAGTTACGGGGGTAT 274 Query 172 TTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACC 231 |||||||| ||||||| | |||| | || | ||| | ||||||||||| ||||| Sbjct 275 TTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGCATTCTCTACCTACCCACC 334 Query 232 TGTGTCGGTTTACGGTA 248 ||||||||||| |||| Sbjct 335 TGTGTCGGTTTCGGGTA 351 >seq248150 Length=2497 Score = 183 bits (202), Expect = 4e-44 Identities = 192/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||| | ||| || ||||| || |||| | || || ||| Sbjct 2441 TTAACCTTCCAGCACCGGGCAGACATCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 2383 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| |||||||| || | || | |||||||| ||| |||| | Sbjct 2382 GTGCTGTGTTTTTAATAAACAGTTGCAGCAGCCTGGTATCTGCGACTGCCAATAGCTTAC 2323 Query 122 ----CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || ||| ||||||| ||| || ||||||||||||||||||| |||||||||| Sbjct 2322 GGAGCAAGTCCTTCACCATCAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGCC 2263 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| | || ||||| | | | |||||| ||||||||||||||| |||||||||| Sbjct 2262 TAGTTCCTTCAGCAGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGATCACCTGTGTC 2203 Query 238 GGTTTACGGTA 248 |||||| |||| Sbjct 2202 GGTTTAGGGTA 2192 >seq57114 Length=25345 Score = 149 bits (164), Expect = 9e-34 Identities = 179/241 (74%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 3923 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 3865 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 3864 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 3808 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | ||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 3807 -------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 3756 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | |||| |||||| |||||| || ||||||||||||||| ||| Sbjct 3755 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 3696 Query 248 A 248 | Sbjct 3695 A 3695 >seq89940 Length=26391 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 3954 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 4012 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 4013 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 4059 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 4060 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 4113 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 4114 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 4173 Query 246 GTA 248 ||| Sbjct 4174 GTA 4176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692602357244