Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq248150 403 4e-110 seq89940 269 7e-70 seq57114 257 4e-66 seq172348 159 9e-37 >seq248150 Length=2497 Score = 403 bits (446), Expect = 4e-110 Identities = 258/281 (92%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 139 CGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATCAATTAA 198 |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 2497 CGGCCGCCGTTTACTGGGGCTTCGATCAAGAGCTTCGCTTACGCTAACCCCATCAATTAA 2438 Query 199 CCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCT 258 |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 2437 CCTTCCAGCACCGGGCAGACATCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCT 2378 Query 259 GTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACGGAGC 318 |||||||||||||||||| ||||| ||||||||||| |||| | || |||||||||||| Sbjct 2377 GTGTTTTTAATAAACAGTTGCAGCAGCCTGGTATCTGCGACTGCCAATAGCTTACGGAGC 2318 Query 319 AAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTT 378 |||||||||||| ||| | ||| ||||||||||||||||||||| || |||||||||||| Sbjct 2317 AAGTCCTTCACCATCAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGCCTAGTT 2258 Query 379 CCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||| | |||||||||||||||||||||||||||||||| Sbjct 2257 CCTTCAGCAGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 2217 >seq89940 Length=26391 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 3764 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 3823 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3824 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 3883 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 3884 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 3943 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 3944 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 4003 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 4004 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 4057 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 4058 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 4100 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 4101 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 4158 >seq57114 Length=25345 Score = 257 bits (284), Expect = 4e-66 Identities = 304/412 (74%), Gaps = 21/412 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||||| ||| | |||||||||| || Sbjct 4111 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGGGTCCATGTCGGAGACAGCGGGGCA 4052 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 4051 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 3992 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 3991 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 3938 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || |||| |||||||||||| |||| || |||||| || || | | Sbjct 3937 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 3878 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 3877 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 3818 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 3817 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 3773 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 3772 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 3721 >seq172348 Length=362 Score = 159 bits (176), Expect = 9e-37 Identities = 240/338 (71%), Gaps = 20/338 (6%) Strand=Plus/Plus Query 104 CAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGA 163 ||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||||| | Sbjct 1 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTAAA 60 Query 164 TCAAGAGCTTCGC----------GTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGG 213 | ||||| | |||| | | || || |||||||||| |||||||| Sbjct 61 TTCTCCGCTTCACCCCCTAAAGGGTTAACGAGTCC--TC--TTAACCTTCCAGCACCGGG 116 Query 214 CAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAAC 273 ||||||||| || ||||| || ||| | || ||| | ||||||||||||||||| Sbjct 117 CAGGCGTCAGTCCGTATACATCGTCTTACAACTTCGCACGGACCTGTGTTTTTAATAAAC 176 Query 274 AGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGC---TTACGGAGCAAG--TCCTTCA 328 |||||| | |||| ||| ||||| || ||| | || || | | ||||| Sbjct 177 AGTCGCTTCTCTCTGGCCTCTGCGACCACCACCAGCACATCACAACGCTTGGTTGCTTCA 236 Query 329 CCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCG 388 || | || | ||||||||||||||||||| | ||||||| |||||||| | Sbjct 237 CCGGGA-TGGTCCCCCTTCTCCCGAAGTTACGGGGGTATTTTGCCGAGTTCCTTAGAGAG 295 Query 389 AGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||| |||| || ||| || |||||||||| | |||| Sbjct 296 AGTTGTCTCGCGCCCCTAGGCATTCTCTACCTACCCAC 333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1257430789376