Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01001182.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq249645 86.0 9e-15 seq43566 80.6 4e-13 >seq249645 Length=476466 Score = 86.0 bits (94), Expect = 9e-15 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 61 GGTGCCGGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCG 120 || || || |||||||| | ||| || |||||||||||||| |||||||||||||| || Sbjct 209602 GGAGCAGGGGCTTCTTCTAATACTTTTTGGTGACGACGTTGTAGCGAGCAATCGCGATCA 209543 Query 121 CCCAGGTGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 || || || || | ||| | ||| || || ||| || ||||| ||||| || ||| Sbjct 209542 TACAAATGAATAGCATTGCCGTTGCCATCACCCAATACCTGTACTTCTACGTGGCGCGGG 209483 Query 181 TT 182 || Sbjct 209482 TT 209481 >seq43566 Length=317 Score = 80.6 bits (88), Expect = 4e-13 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 67 GGCGCTTCTTCCAGTACCTTCTGGTGACGACGTTGCAGCGAGCAATCGCGGTCGCCCAGG 126 ||||| || || | ||||||||||| || || ||||| ||||| || || ||||| ||| Sbjct 305 GGCGCCTCCTCGATGACCTTCTGGTGGCGGCGCTGCAGGGAGCACTCTCGTTCGCCGAGG 246 Query 127 TGGATGGCGTGGCCCTGGCCGTCGGACAGTACTTGCACTTCCACGTGACGTGGG 180 |||||| | | ||| || |||||| || || || || || | |||||| ||| Sbjct 245 TGGATGACATTGCCGTGTGCGTCGGCCATGACCTGGACCTCGATGTGACGCGGG 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734094664360