Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq248150 461 2e-127 seq89940 226 7e-57 seq117821 161 2e-37 seq115908 161 2e-37 seq57114 111 4e-22 seq54008 82.4 2e-13 seq23659 78.8 2e-12 >seq248150 Length=2497 Score = 461 bits (510), Expect = 2e-127 Identities = 359/415 (87%), Gaps = 10/415 (2%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| ||||| || || ||||| ||||| ||| ||||||||||||| || Sbjct 1365 CCTATCCACAAGTCATCCC-CTGGCTTTT-CAACGACAGTGGGTTCGGTCCTCCGGTGCC 1308 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| || ||||||||||| ||| ||||||||| | |||||| ||||||||| | Sbjct 1307 T-GTTACGGCAC-TTTCAACCTGCTCAT-GGATAGATCACTCGGTTT-CGGGTCTATA-C 1253 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 || || ||||||||||||| ||||||||| ||| | ||||| |||||||| ||||||| Sbjct 1252 CCTGCAACTAGACGCCCTATTAAGACTCGGTTTCC-CTACGGCTCCCCTAAACGGTTAAC 1194 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || || ||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1193 CTT-GCTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCGGTCACCCAACAA 1135 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || Sbjct 1134 -GTGGGCTCCCACTGCTTGTACGCACACGGTTTCAGGTTCTATTTCACTCCCCTCACAGG 1076 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 1075 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 1016 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||| |||| ||| |||||||||| ||| ||||| Sbjct 1015 CCTTGGAGGATGGTCCCCCCATCTTCAAACAGGATTTCTCGTGCCCCGCTCTACT 961 >seq89940 Length=26391 Score = 226 bits (250), Expect = 7e-57 Identities = 310/415 (75%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 5033 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 5089 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||||| ||||||| ||| | || |||||| || | || Sbjct 5090 ACCCAAGCTT-CATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 5145 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 5146 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 5203 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | || Sbjct 5204 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGG 5260 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 5261 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 5319 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 5320 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 5379 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 5380 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 5434 >seq117821 Length=319 Score = 161 bits (178), Expect = 2e-37 Identities = 160/205 (78%), Gaps = 3/205 (1%) Strand=Plus/Minus Query 214 TTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGG 273 || ||||||||| |||| ||||||| || | ||||| ||| ||||| ||| |||| Sbjct 319 TTCTACAAAAGGCACGCCATCACCCATTAACG--GGCTCTGACTATTTGTAGGCACACGG 262 Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 ||||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||| Sbjct 261 TTTCAGGATCTCTTTCACTCCCCT-TCCGGGGTGCTTTTCTCCTTTCCCTCACGGTACTT 203 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGAC 393 || | |||||||||| | ||||||||| ||| | |||||| || ||||| || Sbjct 202 GTCCGCTATCGGTCATCTGGGAGTATTTAGGCTTATCAGGTGGTCCTGACAGATTCACAC 143 Query 394 AAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||| || |||| ||||| Sbjct 142 GGGATTTCTCGGGCCCCGTGCTACT 118 >seq115908 Length=488 Score = 161 bits (178), Expect = 2e-37 Identities = 174/224 (78%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCC-AACAAAGTGGGCTCCCACT 257 ||| |||| | | |||| | ||||||| |||| |||||| ||||||| ||||| || Sbjct 487 TAACTCGCAGGCTCATTCTTCAAAAGGCACGCCATCACCCCAACAAAGGAGGCTCTGACG 428 Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 | ||||| ||| ||||||||||| |||||||||||||||| ||||||| |||||| || Sbjct 427 GATTGTAAGCACACGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCACCA 369 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCA-GTAGTATTTAGCCTTGGAGGATGG 376 |||||||||||||||| | | |||||||||| ||| | ||||||||||||| | ||| Sbjct 368 TTCCCTCACGGTACTA-TCCGCTATCGGTCA-TCAGGAAGTATTTAGCCTTACCAGGTGG 311 Query 377 TCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| || ||||| || | || | || | ||| ||||||| Sbjct 310 TCCTGGCAGATTCACACGACATTCCACGAGTATCGTGCTACTCG 267 >seq57114 Length=25345 Score = 111 bits (122), Expect = 4e-22 Identities = 141/193 (73%), Gaps = 17/193 (9%) Strand=Plus/Minus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTC---------- 252 |||||||||||| || |||||||||||| || | | |||| ||| Sbjct 2496 TCGCTGACCCATCATGCAAAAGGTACGCCGTTAG---AGTGAGTGCGCTTGACTACTCCT 2440 Query 253 -CCACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCT 309 | |||| |||| ||||| | | ||||| ||| ||| ||||||| || ||| |||| Sbjct 2439 TCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCGTCATAGGG-TTCT 2381 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| |||||||||||||||||| || | |||||||||| | || | || |||| ||| | Sbjct 2380 TTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAG 2321 Query 370 AGGATGGTCCCCC 382 ||| ||||||||| Sbjct 2320 AGGGTGGTCCCCC 2308 >seq54008 Length=427 Score = 82.4 bits (90), Expect = 2e-13 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 327 GGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATA 386 |||||| ||||||||||||||| | | ||||||||||||||| |||||||| ||| | Sbjct 1 GGTACTGGTTCACTATCGGTCACTAGGGAGTATTTAGCCTTGGGAGATGGTCCTCCCGGA 60 Query 387 TTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| ||| ||||| |||| ||| | ||||| Sbjct 61 TTCCGACGGGGTTTCACGTGTCCCGCCGTACTC 93 >seq23659 Length=329 Score = 78.8 bits (86), Expect = 2e-12 Identities = 126/169 (75%), Gaps = 9/169 (5%) Strand=Plus/Plus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | |||| |||| ||| |||||||||||||| | Sbjct 155 CCTATCCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGACG 212 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||| || | ||||||||| |||| ||||||||| | | |||||||||| | Sbjct 213 T-CTTA-CCGTCGCTTCAACCTGGCCAT-GGATAGATCACTTCG-CTTCGGGTCTAGAAC 268 Query 124 CCAGCGACT-AGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC 171 | |||||| | ||||||| | |||||||| |||||||||| || ||| Sbjct 269 AC-GCGACTGAATCGCCCTATTCAGACTCGC-TTTCGCTACGGCTACCC 315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1238282097152