Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq101761 178 2e-42 seq89940 167 4e-39 seq57114 122 1e-25 >seq101761 Length=270 Score = 178 bits (196), Expect = 2e-42 Identities = 195/257 (76%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| |||||| |||||| | | |||| | |||||||||| ||||| Sbjct 256 CCCACGCTTTCGCTCCTCAGTGTCAGTAATGGCCCAGAGGGCTGCCTTCGCCATCGGTGT 197 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCC-GATTGCCTCTCCAGCA 119 |||||| |||||| |||||||||||||||||| |||||||| || | || || | ||| Sbjct 196 TCCTCCTGATATCTGCGCATTTCACCGCTACACCAGGAATTCCAGACT-CCCCTACTGCA 138 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 ||| || | | || | | |||| || ||||||| ||||||||| | ||| Sbjct 137 CTCTAGTCAGCCCGTACCCACTGCACGCGCAACGTTGAGCGTTGGGTTTTCACAGCAGAC 78 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | || ||||| || |||||| |||||||| |||||| |||||||| ||||| Sbjct 77 GTGACCAACCACCTACGAGCTCTTTACGCCCAATAATTCCGGACAACGCTTGTACCCTAC 18 Query 240 GTATTACCGCGGCTGCT 256 ||||||||||||||||| Sbjct 17 GTATTACCGCGGCTGCT 1 >seq89940 Length=26391 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 8921 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 8980 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | ||||||| Sbjct 8981 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCAAG 9040 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | || | ||||||||||| | ||| || | ||||| Sbjct 9041 CTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 9100 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 9101 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 9160 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 9161 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 9205 >seq57114 Length=25345 Score = 122 bits (134), Expect = 1e-25 Identities = 200/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 11936 CCCATGCTTTCGCACCCCAGCGTCGGTAGAGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 11995 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| |||||||| || |||||| |||||| | ||||| ||| Sbjct 11996 TCCTTCGTAGATCTGTAGATTTCACCCCTCCACACGAAATTCCACTCTCCTCTGTCTCAC 12055 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| | ||||| || ||| || | ||| | |||||| | Sbjct 12056 TCAAGTTCATTGGTTTCGAAAGCATTCCGCCACTTTTTGGCGAC-----TTTCACTTTCA 12110 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| || | | | |||| | ||| |||||| || Sbjct 12111 ACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCC 12170 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 12171 CCGTTTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 12218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 826654426388