Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq137846 291 8e-77 seq53167 127 2e-27 seq182048 111 2e-22 seq240523 102 8e-20 >seq137846 Length=517 Score = 291 bits (322), Expect = 8e-77 Identities = 180/191 (94%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| Sbjct 395 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTATGCTCGAATA 336 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 335 CATTAGCATGGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 277 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 276 CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTC 217 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 216 TTGGATTTATT 206 >seq53167 Length=7246 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 2329 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 2388 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 2389 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 2446 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 2447 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 2506 Query 190 T 190 | Sbjct 2507 T 2507 >seq182048 Length=368 Score = 111 bits (122), Expect = 2e-22 Identities = 134/181 (74%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT----TTGCTCGAATACATTA 65 |||||||||||||| ||||||||| | | |||||||| |||| |||| | Sbjct 252 ACTTTTACTTTGAACAAATTAGAGTGCTTCAAGCAGGCTGGATATTGCCTGAATGCTAGT 193 Query 66 CCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTA 125 ||||||||||| ||||||||| | |||||||||||||| ||||| || ||| ||| Sbjct 192 GCATGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTTTCAGAACCAGAGGTA 134 Query 126 ATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||||| ||| || || |||||| | ||||| || | |||||||||||||||| Sbjct 133 ATGATTAATGGAGACAGGCGGGGGCATTCGTATTGCGACGTTAGAGGTGAAATTCTTGGA 74 Query 186 T 186 | Sbjct 73 T 73 >seq240523 Length=230 Score = 102 bits (112), Expect = 8e-20 Identities = 127/170 (75%), Gaps = 7/170 (4%) Strand=Plus/Minus Query 20 TGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC----TCGAATACATTACCATGGAATA 75 |||||||||||||| | ||||||| || |||| | |||||||| | ||||||||| Sbjct 230 TGAAAAAATTAGAGTGCTCAAAGC-GGTCTTTACACGATCGAATACTGTTGCATGGAATA 172 Query 76 ATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATA 135 || |||||||| | ||||||||||||| ||| | | ||| | |||||||| || | Sbjct 171 ATGAAATAGGACTTT-GGTTCTATTTTGTTGGTCT-TCGGAACCAAGGTAATGATTAAGA 114 Query 136 CGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 ||| || |||||| | |||||| | | |||||||||||||||| Sbjct 113 GGGACAGACGGGGGCATTAGTATTGCGACGCTAGAGGTGAAATTCTTGGA 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510674549120