Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq259943 210 2e-52 seq169652 80.6 3e-13 seq57114 75.2 1e-11 >seq259943 Length=334 Score = 210 bits (232), Expect = 2e-52 Identities = 140/156 (90%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| Sbjct 2 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGACCTACTTTCGTACCTG 61 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| |||||||||||||| ||||||||||||||||||||||| ||| || Sbjct 62 CTCGACTTGTCAGTCTCGCAGTCAAGCTGGCTTATGCCATTGCACTAACCTCCTGATTTC 121 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| ||||||| |||||||||||||||||||| Sbjct 122 CGACCAGGATTAGCCAACCTTCGTGCTCCTCCGTTA 157 >seq169652 Length=299 Score = 80.6 bits (88), Expect = 3e-13 Identities = 97/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 48 GAACCACCGGATCACTATGACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCA 107 ||||||||||||||||| | || |||||| ||||||||| || | ||||||||||| Sbjct 298 GAACCACCGGATCACTAAGTCCGTCTTTCGACCCTGCTCGACTTGTAAGTCTCGCAGTCA 239 Query 108 AGCCAGCTTATGCCATTGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGT 167 ||| |||||||| || |||| | ||| ||| ||| | | || ||||| | Sbjct 238 AGCTTCCTTATGCCTTTACACTCTATGAATGATTTCCAACCATTCTGAGGAAACCTTTGA 179 Query 168 GCTCCTCCGTTA 179 || ||||||||| Sbjct 178 GCGCCTCCGTTA 167 >seq57114 Length=25345 Score = 75.2 bits (82), Expect = 1e-11 Identities = 82/109 (75%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||| ||||||||| | | || ||||||||||||| || |||||| ||| Sbjct 4483 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 4424 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132 |||| | ||| |||| |||||| || |||||| ||||| | || || Sbjct 4423 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 4375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472373957936