Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq89940 268 1e-69 seq57114 199 6e-49 seq2867 156 7e-36 seq159155 145 1e-32 seq2866 113 7e-23 seq98422 98.7 2e-18 >seq89940 Length=26391 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 3024 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 3083 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 3084 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 3143 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 3144 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 3203 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 3204 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 3263 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 3264 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 3296 >seq57114 Length=25345 Score = 199 bits (220), Expect = 6e-49 Identities = 195/251 (78%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||||||| || ||| ||| || ||||| ||| | Sbjct 4807 CAGCAGTTCTTCCATACCAACTTAGCTTCCCGGCGCTGCTATTGTCATAACAACCGGTAC 4748 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 4747 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 4688 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 4687 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 4628 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 4627 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 4568 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 4567 AGTCGACATCG 4557 >seq2867 Length=297 Score = 156 bits (172), Expect = 7e-36 Identities = 136/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 11 TTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACT 70 |||| ||||| |||| |||||| ||||||| ||| ||| ||||| || || |||| Sbjct 171 TTCGTGCTTATATGCTTTCAGCGGTTATCCCATCCGAACGTAGCTACCGGGCAATGCCAC 112 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 |||| ||||| | ||||||||||| ||||| | ||||||||||||||| | ||| Sbjct 111 TGGCGTGACAACCCGAACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTACTAGGAGCAG 52 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTC 179 ||||||||||||||| ||||||||| | |||||||||||||||||||| Sbjct 51 ATCCTCTCAAATTTCCAACGCCCACGGCAGATAGGGACCGAACTGTCTC 3 >seq159155 Length=384 Score = 145 bits (160), Expect = 1e-32 Identities = 139/178 (78%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| |||||||||| |||||| ||||||| ||| ||| ||||| || | Sbjct 205 GAGGTGGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCATCCGAACGTAGCTACCGGG 264 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | |||| |||| ||||| | ||||||||||| ||||| |||||||||||||| Sbjct 265 CAATGCCACTGGCGTGACAACCCGAACACCAGAGGTTCGTCCAATTCGGTCCTCTCGTAC 324 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTC 179 || ||| ||| |||||||||| ||||||||| ||||| |||||||||||||| Sbjct 325 TAGAATCAGATCCACTCAAATTTCTTACGCCCACAGTAGATAGAGACCGAACTGTCTC 382 >seq2866 Length=853 Score = 113 bits (124), Expect = 7e-23 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 || ||| ||||||||||||||||| |||||| |||| | ||||| | | ||||||| Sbjct 739 GGTTTCCCGCTTAGATGCCTTCAGCGGTTATCCATTCCGTATATAGCTACTCTGCTATGC 798 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 |||||||| ||||| | | |||||||| | ||||||||||||||||||||||| Sbjct 799 CCTTGGCAGGACAACAGATCCACCAGAGATACGTCCATCCCGGTCCTCTCGTACT 853 >seq98422 Length=7671 Score = 98.7 bits (108), Expect = 2e-18 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 149 CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCT 208 ||||||| |||||| ||||||||| ||||| ||| |||||||| | ||| | | | Sbjct 5104 CGCCCACACCGGATATGGACCGAACGGTCTCATAACGCTCTGAACCTATCTCACATACTA 5045 Query 209 CTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCC 268 ||||||||||||||| ||||||||||| || |||| |||||||| | | | || || Sbjct 5044 TTTTAATGGGCGAACAACCCAACCCTTGAAACATACTACAGCCCCATGTGGCAAAGAACC 4985 Query 269 GACATCG 275 | ||||| Sbjct 4984 GGCATCG 4978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778778687408