Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq89940 333 8e-89 seq57114 260 4e-67 seq236447 145 2e-32 seq101761 86.0 2e-14 >seq89940 Length=26391 Score = 333 bits (368), Expect = 8e-89 Identities = 281/343 (82%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 9433 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 9374 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 9373 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 9314 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | || Sbjct 9313 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGA 9254 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | || ||||| |||||||||| || ||| Sbjct 9253 AGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 9194 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||| Sbjct 9193 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCG 9134 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||||||||| || |||||||| || ||||||| Sbjct 9133 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 9092 >seq57114 Length=25345 Score = 260 bits (288), Expect = 4e-67 Identities = 256/327 (78%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 12445 ATTAGGTAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 12386 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| || |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 12385 ATGATCAGCCACACCGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 12326 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| ||||||||| |||||| |||||||| || ||||| | | Sbjct 12325 AATCTTGGACAATGGGCGCAAGCCTGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 12266 Query 346 TCGGGTCGTAAAGCTCTGTCCTC--AAGGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | |||||||||||| || || | | ||| ||||| ||| ||||| ||||||| Sbjct 12265 GCCGCTCGTAAAGCTCTTTCGTCGAATGCGCGATCATGACATGACTCGAGGAAGAAGCCC 12206 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 12205 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCAAGTGTTCTTCGGAATGA 12146 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || ||||||||||| |||||| ||| Sbjct 12145 CT-AGGCGTAAAGGGCACGTAGGCGGT 12120 >seq236447 Length=268 Score = 145 bits (160), Expect = 2e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||||| ||||||||||||| ||||||||||||| |||||| |||| | ||||||| Sbjct 154 GATTAGCTTGTTGGTAAGGTAATGGCTTACCAAGGCTACGATCTCTAGCTGGTCTGAGAG 213 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 | | | | |||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 214 GATAACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCA 268 >seq101761 Length=270 Score = 86.0 bits (94), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 420 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGT 479 ||||||||||||||||||||||| | |||||| |||||||||| | |||||||||| | Sbjct 1 AGCAGCCGCGGTAATACGTAGGGTACAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGAGC 59 Query 480 GCGTAGGTGGTT 491 ||||||||||| Sbjct 60 TCGTAGGTGGTT 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1493597993472