Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq89940 282 1e-73 seq101761 230 6e-58 seq57114 210 5e-52 seq31674 118 3e-24 >seq89940 Length=26391 Score = 282 bits (312), Expect = 1e-73 Identities = 307/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 9201 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 9142 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 9141 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 9082 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 9081 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTTGAGTACGGTAGGGGCA 9022 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 9021 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 8962 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||||| ||||| Sbjct 8961 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATT 8902 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 8901 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 8843 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 8842 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 8798 >seq101761 Length=270 Score = 230 bits (254), Expect = 6e-58 Identities = 213/270 (79%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 35 AGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTG 94 ||||||||||||||||||||||| | |||||| |||||||||| ||||||||||| | Sbjct 1 AGCAGCCGCGGTAATACGTAGGGTACAAGCGTTGTCCGGAATTATTGGGCGTAAAGAGCT 60 Query 95 CGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTG 154 ||||||||||| | | ||| | |||||| | | ||||||| | | ||| | | Sbjct 61 CGTAGGTGGTTGGTCACGTCTGCTGTGAAAACCCAACGCTCAACGTTGCGCGTGCAGTGG 120 Query 155 AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGC 214 || | | ||||||||||| ||||| |||||||||| ||||||||||||||||| Sbjct 121 GTACGGGCTGACTAGAGTGCAGTAGGGGAGTCTGGAATTCCTGGTGTAGCGGTGAAATGC 180 Query 215 GTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGA 274 | |||||| |||||||||||| |||||||||| || |||| | | ||||||||||| Sbjct 181 GCAGATATCAGGAGGAACACCGATGGCGAAGGCAGCCCTCTGGGCCATTACTGACACTGA 240 Query 275 GGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||||||||||||| ||||||||| Sbjct 241 GGAGCGAAAGCGTGGGGAGCGAACAGGATT 270 >seq57114 Length=25345 Score = 210 bits (232), Expect = 5e-52 Identities = 252/338 (75%), Gaps = 6/338 (2%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 12222 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAAACGGGGGGGGCA 12163 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||| ||||||||||| |||||| ||| | || | ||| Sbjct 12162 AGTGTTCTTCGGAATGACTAGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 12103 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 |||| | | | || | ||| |||||| ||||| | || ||||| || Sbjct 12102 AAAGTC---GCCAAAAAGTGGCGGAATGCTTTCGAAACCAATGAACTTGAGTGAGACAGA 12046 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||| | ||| || |||||||| |||| | | |||||| ||| | Sbjct 12045 GGAGAGTGGAATTTCGTGTGGAGGGGTGAAATCTACAGATCTACGAAGGAACGCCAAAAG 11986 Query 241 CGAAGGCGGCTTGCTGGA-CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||||| ||| |||| || || | ||| ||| || ||||||| |||||||| ||| Sbjct 11985 CGAAGGCAGCTCTCTGGGTCTCTACC-GACGCTGGGGTGCGAAAGCATGGGGAGCGAACG 11927 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||||||||||||| |||||||||||||| Sbjct 11926 GGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 11889 >seq31674 Length=299 Score = 118 bits (130), Expect = 3e-24 Identities = 197/280 (70%), Gaps = 5/280 (2%) Strand=Plus/Minus Query 131 GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGA 190 |||||||||| || || | ||||| | ||| |||| | |||||| | ||| Sbjct 291 GGCTCAACCCTGGACACGCGGTGAAAACTACCAAGCTTGAGTATGGTAGGGGCTAAGGGA 232 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||| | ||| |||||||||| || |||| || | | |||||||| ||||||| || Sbjct 231 ATTTTTGGTGGAGCGGTGAAACGCATAGAGATCGGAAAGAACACCAATGGCGAAAGCACT 172 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 || ||||| | | |||||||||| || || | ||||||| | | ||||||||| Sbjct 171 CTGTTGGACCGACAATGACACTGAGAGACGCAACCTAGGGGAGCGATG-GCATTAGATAC 113 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT--AAGTGCTCCG 368 ||| ||||||| |||||||||||| |||||||| | | | | || | || | Sbjct 112 CCTAGTAGTCCTAGCCGTAAACGATTTATACTAGGCG-ATGTGTGTATCGACCTG-TGAA 55 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | ||| ||||| ||||||| ||| |||||||||| Sbjct 54 GTGTTGTAGCTAACGCGTTAAGTATACCATCTGGGGAGTA 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1199984712704