Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20nordmanniana_20[genbank_20GCA_5F001484925.1_202016-01-04] 267,228 sequences; 342,306,570 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq53167 316 4e-84 seq257407 307 2e-81 seq61283 215 1e-53 seq227134 140 6e-31 >seq53167 Length=7246 Score = 316 bits (350), Expect = 4e-84 Identities = 262/316 (83%), Gaps = 13/316 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCA------GGCCCGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | ||| | || ||| |||||| Sbjct 2911 GAACGAGACCTCAGCCTGCTAACTAGCTACGTGGAGGCATCCCTTCACGG----CCGGCT 2966 Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 ||||||||||||||| | | | || | | |||||||||||||||||||||||||||||| Sbjct 2967 TCTTAGAGGGACTATGGCCGTTTAGGCCAAGGAAGTTTGAGGCAATAACAGGTCTGTGAT 3026 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||||||||||||||||||||||||||| | ||||||||| || ||| Sbjct 3027 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTTTAT-ACC 3085 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 ||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||| Sbjct 3086 TTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGCA 3144 Query 253 ATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTAC 312 ||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||| Sbjct 3145 ATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTAC 3204 Query 313 GTCCCTGCCCTTTGTA 328 |||||||||||||||| Sbjct 3205 GTCCCTGCCCTTTGTA 3220 >seq257407 Length=310 Score = 307 bits (340), Expect = 2e-81 Identities = 232/280 (83%), Gaps = 14/280 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| | | | || | ||||| |||||||| Sbjct 271 GAACGAGACCTTAACCTGCTAAATAGTCCGTATTACCCCGGTAGTACGCCGACTTCTTAG 212 Query 80 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTA 139 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 211 AGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACANNNNNNNNNNN------ 158 Query 140 GATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCG 199 ||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 157 --------GGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATTTCCTTGTCCG 106 Query 200 GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 259 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 105 AAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTG 46 Query 260 CTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 |||||||||||||||| |||||||||||| ||||||||| Sbjct 45 CTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGC 6 >seq61283 Length=1961 Score = 215 bits (238), Expect = 1e-53 Identities = 208/261 (80%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 68 CCGGCTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCT 127 |||||||||||||| |||| | | | | ||| | |||| ||||||| ||||||| |||| Sbjct 1585 CCGGCTTCTTAGAGAGACTTT--GTTTAGGCCTA-GGAAATTTGAGGTAATAACACGTCT 1641 Query 128 GTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA 187 ||||| |||||| |||||| ||||| ||| ||||||||||||| | ||||||||| | Sbjct 1642 GTGATACCCTTAAATGTTCAGGGCCACACACGCGCTACACTGATGTATTCAACGAGTTTA 1701 Query 188 TCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCA 247 |||||| | || | | | | |||||||| | || | | ||||| |||||||||| | Sbjct 1702 -CACCTTAGTCGACATGCCCGAGTAATCTT--TGAAAT-TATCGTGATGGGGATAGATAA 1757 Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 |||||||| ||| ||||| ||||||||| | ||||||||||| |||||||| ||||||| Sbjct 1758 TTGCAATTGTTGATCTTCTACGAGGAATTCTTAGTAAGCGCGACTCATCAGCTCGCGTTG 1817 Query 308 ATTACGTCCCTGCCCTTTGTA 328 | | |||||||| | |||||| Sbjct 1818 ACTCCGTCCCTGTCTTTTGTA 1838 >seq227134 Length=816 Score = 140 bits (154), Expect = 6e-31 Identities = 143/182 (79%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 352 GCGATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAAGG 293 Query 174 AGCCAACGAGT-TCATCA--CCTTGGCCGGAAGG--TCTGGGTAATCTTGTTAAACTCTG 228 | || || || | | || ||| ||||| ||| || |||||| | | || ||| Sbjct 292 AATCAGCGTGTGTTAACATTCCTGGGCCGACAGGCTTCCGGGTAACCCGCTGAACCTCCT 233 Query 229 TCGTGC-TGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||| | ||||| | | |||||||| || | | | |||||||||| || |||||||| Sbjct 232 TCGTGCTTAGGGATCGTGGCTTGCAATTTTTCCACGTGAACGAGGAATTCCCAGTAAGCG 173 Query 288 CG 289 || Sbjct 172 CG 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944668816384